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    LOC4343931 AP-4 complex subunit mu [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343931, updated on 9-Aug-2018

    Summary

    Gene symbol
    LOC4343931
    Gene description
    AP-4 complex subunit mu
    Locus tag
    OSNPB_070620300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 37.4), leaves after flowering (RPKM 37.3) and 6 other tissues See more

    Genomic context

    See LOC4343931 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25640846..25645813)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene CDPK-related kinase 5 Neighboring gene uncharacterized LOC4343930 Neighboring gene ADP-ribosylation factor-related protein 1 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    General protein information

    Preferred Names
    AP-4 complex subunit mu
    Names
    Os07g0620300
    P0594D10.112
    putative clathrin-adaptor medium chain apm 4

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25640846..25645813
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791559.2XP_015647045.1  AP-4 complex subunit mu

      UniProtKB/TrEMBL
      Q7XI39
      Conserved Domains (2) summary
      cl02092
      Location:64134
      Clat_adaptor_s; Clathrin adaptor complex small chain
      cd09253
      Location:174451
      AP-4_Mu4_Cterm; C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4
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