Format

Send to:

Choose Destination
    • Showing Current items.

    LOC4331509 catalase-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331509, updated on 15-Aug-2018

    Summary

    Gene symbol
    LOC4331509
    Gene description
    catalase-1
    Locus tag
    OSNPB_030131200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CatC; catalase
    Expression
    Biased expression in roots after flowering (RPKM 530.4), leaves after flowering (RPKM 461.5) and 2 other tissues See more

    Genomic context

    See LOC4331509 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1787663..1790952, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PIX13 Neighboring gene protein NLP1-like Neighboring gene ubiquitin domain-containing protein DSK2a Neighboring gene poly(A) polymerase I

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Homology

    General protein information

    Preferred Names
    catalase-1
    Names
    Os03g0131200

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1787663..1790952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774263.2XP_015629749.1  catalase-1

      UniProtKB/TrEMBL
      Q10S82
      Conserved Domains (2) summary
      cd08154
      Location:17486
      catalase_clade_1; Clade 1 of the heme-binding enzyme catalase
      PLN02609
      Location:1492
      PLN02609; catalase
    Support Center