Format

Send to:

Choose Destination
    • Showing Current items.

    nr4a1 nuclear receptor subfamily 4, group A, member 1 [ Danio rerio (zebrafish) ]

    Gene ID: 431720, updated on 5-Jan-2020

    Summary

    Official Symbol
    nr4a1provided by ZNC
    Official Full Name
    nuclear receptor subfamily 4, group A, member 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040704-11
    See related
    Ensembl:ENSDARG00000000796
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    NUR77; zgc:92434
    Orthologs

    Genomic context

    See nr4a1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (32151330..32157937, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (32224800..32231403, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 23 NC_007134.5 (32389897..32396487, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene zgc:56699 Neighboring gene reprimo, TP53 dependent G2 arrest mediator homolog 3 Neighboring gene uncharacterized LOC103909698 Neighboring gene GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein Neighboring gene diacylglycerol kinase, alpha a

    Genomic regions, transcripts, and products

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    RNA polymerase II proximal promoter sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA polymerase II regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    glucocorticoid receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    steroid hormone receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cellular response to corticotropin-releasing hormone stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    nuclear receptor subfamily 4 group A member 1
    Names
    NGFIB
    neural orphan nuclear receptor NUR77

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002173.1NP_001002173.1  nuclear receptor subfamily 4 group A member 1

      See identical proteins and their annotated locations for NP_001002173.1

      Status: PROVISIONAL

      Source sequence(s)
      BC074092
      UniProtKB/TrEMBL
      Q6GMG3
      Related
      ENSDARP00000001911.9, ENSDART00000000876.11
      Conserved Domains (2) summary
      cd07348
      Location:337574
      NR_LBD_NGFI-B; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
      cd06969
      Location:237311
      NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      32151330..32157937 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001797330.2 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395161.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      102848..109338 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center