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    ATG16L1 autophagy related 16 like 1 [ Gallus gallus (chicken) ]

    Gene ID: 424746, updated on 7-Jul-2018

    Summary

    Symbol
    ATG16L1provided by CGNC
    Full Name
    autophagy related 16 like 1provided by CGNC
    Primary source
    CGNC:1127
    See related
    Ensembl:ENSGALG00000001619
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    APG16L; ATG16L2
    Orthologs

    Genomic context

    See ATG16L1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 9 NC_006096.5 (1346588..1366931)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 9 NC_006096.4 (1162599..1182968)

    Chromosome 9 - NC_006096.5Genomic Context describing neighboring genes Neighboring gene neuronal guanine nucleotide exchange factor Neighboring gene neuraminidase 2 Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene small Cajal body-specific RNA 6 Neighboring gene small Cajal body-specific RNA 6 Neighboring gene uncharacterized LOC112533001 Neighboring gene S-antigen visual arrestin Neighboring gene diacylglycerol kinase delta Neighboring gene uncharacterized LOC107051885 Neighboring gene coagulation factor IX-like Neighboring gene protein C, inactivator of coagulation factors Va and VIIIa

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Autophagy - animal, organism-specific biosystem (from KEGG)
      Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - animal, conserved biosystem (from KEGG)
      Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - other, organism-specific biosystem (from KEGG)
      Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Autophagy - other, conserved biosystem (from KEGG)
      Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • NOD-like receptor signaling pathway, organism-specific biosystem (from KEGG)
      NOD-like receptor signaling pathway, organism-specific biosystemSpecific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains mo...
    • NOD-like receptor signaling pathway, conserved biosystem (from KEGG)
      NOD-like receptor signaling pathway, conserved biosystemSpecific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains mo...

    General gene information

    Homology

    General protein information

    Preferred Names
    autophagy-related protein 16-1
    Names
    ATG16 autophagy related 16-like 1
    autophagy related 16 like 2

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006096.5 Reference GRCg6a Primary Assembly

      Range
      1346588..1366931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004936943.3XP_004937000.1  autophagy-related protein 16-1 isoform X8

      Conserved Domains (5) summary
      COG2319
      Location:332545
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:332545
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam07106
      Location:87170
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
      sd00039
      Location:343381
      7WD40; WD40 repeat [structural motif]
    2. XM_015277206.2XP_015132692.1  autophagy-related protein 16-1 isoform X9

      Conserved Domains (5) summary
      COG2319
      Location:282563
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:327563
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam07106
      Location:87170
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
      sd00039
      Location:331364
      7WD40; WD40 repeat [structural motif]
    3. XM_004936939.3XP_004936996.1  autophagy-related protein 16-1 isoform X2

      UniProtKB/TrEMBL
      E1BYR9
      Related
      ENSGALP00000002472.4
      Conserved Domains (6) summary
      COG2319
      Location:327621
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:331621
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam07106
      Location:87170
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
      sd00039
      Location:343380
      7WD40; WD40 repeat [structural motif]
      cl00143
      Location:132230
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    4. XM_004936938.3XP_004936995.1  autophagy-related protein 16-1 isoform X1

      Conserved Domains (6) summary
      COG2319
      Location:328622
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:332622
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam07106
      Location:87170
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
      sd00039
      Location:344381
      7WD40; WD40 repeat [structural motif]
      cl00143
      Location:132230
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    5. XM_025153535.1XP_025009303.1  autophagy-related protein 16-1 isoform X11

      Conserved Domains (3) summary
      cd00200
      Location:292528
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:296329
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
    6. XM_025153534.1XP_025009302.1  autophagy-related protein 16-1 isoform X10

      Conserved Domains (3) summary
      cd00200
      Location:311547
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:315348
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
    7. XM_015277204.2XP_015132690.1  autophagy-related protein 16-1 isoform X5

      Conserved Domains (6) summary
      COG2319
      Location:309603
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:313603
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam07106
      Location:87170
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
      sd00039
      Location:325362
      7WD40; WD40 repeat [structural motif]
      cl23849
      Location:79373
      TrbI; Bacterial conjugation TrbI-like protein
    8. XM_003641751.4XP_003641799.1  autophagy-related protein 16-1 isoform X7

      Related
      ENSGALP00000052554.1
      Conserved Domains (6) summary
      COG2319
      Location:292586
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:296586
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam07106
      Location:87170
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
      sd00039
      Location:308345
      7WD40; WD40 repeat [structural motif]
      cl00143
      Location:132230
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    9. XM_004936940.3XP_004936997.1  autophagy-related protein 16-1 isoform X3

      Conserved Domains (6) summary
      COG2319
      Location:312606
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:316606
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam07106
      Location:87170
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
      sd00039
      Location:328365
      7WD40; WD40 repeat [structural motif]
      cl00143
      Location:132230
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    10. XM_004936942.3XP_004936999.1  autophagy-related protein 16-1 isoform X6

      Conserved Domains (7) summary
      COG2319
      Location:293587
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:297587
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam07106
      Location:87170
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      pfam08589
      Location:229275
      DUF1770; Fungal protein of unknown function (DUF1770)
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
      sd00039
      Location:309346
      7WD40; WD40 repeat [structural motif]
      cl00143
      Location:132230
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    11. XM_422568.6XP_422568.2  autophagy-related protein 16-1 isoform X4

      See identical proteins and their annotated locations for XP_422568.2

      Conserved Domains (6) summary
      COG2319
      Location:311605
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:315605
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam07106
      Location:87170
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
      sd00039
      Location:327364
      7WD40; WD40 repeat [structural motif]
      cl00143
      Location:132230
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
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