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    ssbp4 single stranded DNA binding protein 4 [ Danio rerio (zebrafish) ]

    Gene ID: 321750, updated on 12-Aug-2018

    Summary

    Official Symbol
    ssbp4provided by ZNC
    Official Full Name
    single stranded DNA binding protein 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-469
    See related
    Ensembl:ENSDARG00000056483 Vega:OTTDARG00000014079
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    ssbp; wu:fb33f07; si:ch211-202n20.1

    Genomic context

    See ssbp4 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (20954459..21046694, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (20929481..21021716, complement)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene elongation factor RNA polymerase II Neighboring gene FK506 binding protein 8 Neighboring gene transmembrane protein 59-like Neighboring gene cytokine receptor-like factor 1b

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    RNA polymerase II proximal promoter sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    single-stranded DNA-binding protein 4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001202512.2NP_001189441.1  single-stranded DNA-binding protein 4

      Status: VALIDATED

      Source sequence(s)
      AL773593, CT025756
      UniProtKB/TrEMBL
      F1QSI6
      Related
      ENSDARP00000064901.6, ENSDART00000064902.8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81363
      SSDP; Single-stranded DNA binding protein, SSDP

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      20954459..21046694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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