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    nkx2.3 NK2 homeobox 3 [ Danio rerio (zebrafish) ]

    Gene ID: 30698, updated on 1-Aug-2018

    Summary

    Official Symbol
    nkx2.3provided by ZNC
    Official Full Name
    NK2 homeobox 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-990415-178
    See related
    Ensembl:ENSDARG00000039095 Vega:OTTDARG00000035475
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    nk2.3; nkx2-3
    Orthologs

    Genomic context

    See nkx2.3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (40409215..40411907, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (40283325..40286017, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 (mitochondrial iron transporter), member 28 Neighboring gene NK3 homeobox 3 Neighboring gene glutamic-oxaloacetic transaminase 1, soluble Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 1 Neighboring gene heparanase 2

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    homeobox protein Nkx-2.3
    Names
    NK2 transcription factor related 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_131423.1NP_571498.1  homeobox protein Nkx-2.3

      See identical proteins and their annotated locations for NP_571498.1

      Status: PROVISIONAL

      Source sequence(s)
      U66571
      UniProtKB/TrEMBL
      Q98871
      Related
      ENSDARP00000057093.4, OTTDARP00000039635, ENSDART00000057094.5, OTTDART00000050488
      Conserved Domains (1) summary
      smart00389
      Location:142198
      HOX; Homeodomain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      40409215..40411907 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394887.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      101819..104511 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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