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    hoxa13b homeobox A13b [ Danio rerio (zebrafish) ]

    Gene ID: 30438, updated on 2-Oct-2018

    Summary

    Official Symbol
    hoxa13bprovided by ZNC
    Official Full Name
    homeobox A13bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-980526-365
    See related
    Ensembl:ENSDARG00000036254 Vega:OTTDARG00000027625
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    HOXA13; Hoxa-13; wu:fa66g07; zgc:110514
    Orthologs

    Genomic context

    See hoxa13b in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (20895904..20897833)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (21090085..21092014)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene Tax1 (human T-cell leukemia virus type I) binding protein 1b Neighboring gene 3-hydroxyisobutyrate dehydrogenase b Neighboring gene uncharacterized LOC101886298 Neighboring gene homeobox A11b Neighboring gene homeobox A10b

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity, RNA polymerase II-specific IDA
    Inferred from Direct Assay
    more info
    PubMed 
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of transcription by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    homeobox protein Hox-A13b
    Names
    homeo box A13b
    homeobox gene A-13b
    hox-A13

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_131194.2NP_571269.2  homeobox protein Hox-A13b

      See identical proteins and their annotated locations for NP_571269.2

      Status: VALIDATED

      Source sequence(s)
      BC090761
      UniProtKB/Swiss-Prot
      P79724
      Related
      ENSDARP00000052661.4, OTTDARP00000029854, ENSDART00000052662.5, OTTDART00000037253
      Conserved Domains (2) summary
      pfam00046
      Location:226279
      Homeobox; Homeobox domain
      pfam12284
      Location:27129
      HoxA13_N; Hox protein A13 N terminal

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      20895904..20897833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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