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    Rab11fip4 RAB11 family interacting protein 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303337, updated on 13-Aug-2019

    Summary

    Official Symbol
    Rab11fip4provided by RGD
    Official Full Name
    RAB11 family interacting protein 4provided by RGD
    Primary source
    RGD:1305063
    See related
    Ensembl:ENSRNOG00000014135
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305063
    Expression
    Biased expression in Brain (RPKM 213.6), Kidney (RPKM 78.6) and 8 other tissues See more
    Orthologs

    Genomic context

    See Rab11fip4 in Genome Data Viewer
    Location:
    10q25
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (66942363..67051672)
    106 current Rn_Celera (GCF_000002265.2) 10 AC_000078.1 (63520873..63623693)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (64598379..64705864, complement)

    Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene neurofibromin 1 Neighboring gene ecotropic viral integration site 2A Neighboring gene uncharacterized LOC103693399 Neighboring gene uncharacterized LOC102550168 Neighboring gene transfer RNA threonine (anticodon CGU)

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    ADP-ribosylation factor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ADP-ribosylation factor binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Rab GTPase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Rab GTPase binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein homodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Process Evidence Code Pubs
    endocytic recycling IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    neural retina development IEA
    Inferred from Electronic Annotation
    more info
     
    neural retina development ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    positive regulation of G1 to G0 transition IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of G1 to G0 transition ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    regulation of cytokinesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of cytokinesis ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    colocalizes_with centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cleavage furrow IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cleavage furrow ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    endocytic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endocytic vesicle ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    endosome ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    midbody IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    midbody ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    recycling endosome membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    recycling endosome membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    rab11 family-interacting protein 4
    Names
    RAB11 family interacting protein 4 (class II)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107023.1NP_001100493.1  rab11 family-interacting protein 4

      See identical proteins and their annotated locations for NP_001100493.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473948
      UniProtKB/TrEMBL
      D3ZHE5
      Related
      ENSRNOP00000018988.3, ENSRNOT00000018986.4
      Conserved Domains (3) summary
      pfam09457
      Location:596636
      RBD-FIP; FIP domain
      pfam13499
      Location:2178
      EF-hand_7; EF-hand domain pair
      cl03075
      Location:428512
      GrpE; nucleotide exchange factor GrpE

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

      Range
      66942363..67051672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006246903.3XP_006246965.1  rab11 family-interacting protein 4 isoform X1

      Conserved Domains (3) summary
      pfam09457
      Location:573613
      RBD-FIP; FIP domain
      pfam13499
      Location:2178
      EF-hand_7; EF-hand domain pair
      cl03075
      Location:405489
      GrpE; nucleotide exchange factor GrpE
    2. XM_008768017.1XP_008766239.1  rab11 family-interacting protein 4 isoform X2

      Conserved Domains (2) summary
      pfam09457
      Location:516556
      RBD-FIP; FIP domain
      cl03075
      Location:348432
      GrpE; nucleotide exchange factor GrpE
    3. XM_006246904.3XP_006246966.1  rab11 family-interacting protein 4 isoform X3

      Conserved Domains (2) summary
      pfam09457
      Location:494534
      RBD-FIP; FIP domain
      cl03075
      Location:326410
      GrpE; nucleotide exchange factor GrpE

    Alternate Rn_Celera

    Genomic

    1. AC_000078.1 Alternate Rn_Celera

      Range
      63520873..63623693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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