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    cbf5 putative pseudouridylate synthase Cbf5 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542481, updated on 5-Aug-2018

    Summary

    Gene symbol
    cbf5
    Gene description
    putative pseudouridylate synthase Cbf5
    Locus tag
    SPAC29A4.04c
    Gene type
    protein coding
    RNA name
    putative pseudouridylate synthase Cbf5
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces

    Genomic context

    See cbf5 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (5140322..5142190)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ubiquitin-protein ligase E4 Neighboring gene mediator complex subunit Srb6 Neighboring gene CCDC55 family protein Neighboring gene miscRNA Neighboring gene myosin I light chain Cam2 Neighboring gene miscRNA Neighboring gene putative mitochondrial ribosomal protein subunit Mrps9 Neighboring gene translation elongation factor EF-1 gamma subunit Neighboring gene flavoprotein

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    box H/ACA snoRNA binding IC
    Inferred by Curator
    more info
     
    pseudouridine synthase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    pseudouridine synthase activity ISO
    Inferred from Sequence Orthology
    more info
     
    rRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    box H/ACA snoRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    box H/ACA snoRNA 3'-end processing ISO
    Inferred from Sequence Orthology
    more info
     
    mRNA pseudouridine synthesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA pseudouridine synthesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA pseudouridine synthesis ISO
    Inferred from Sequence Orthology
    more info
     
    snRNA pseudouridine synthesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    snRNA pseudouridine synthesis ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    box H/ACA snoRNP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    box H/ACA snoRNP complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol HDA PubMed 

    General protein information

    Preferred Names
    putative pseudouridylate synthase Cbf5

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      5140322..5142190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020307.2NP_594878.1  putative pseudouridylate synthase Cbf5 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594878.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O14007
      Conserved Domains (4) summary
      cd02572
      Location:63245
      PseudoU_synth_hDyskerin; Pseudouridine synthase, human dyskerin like
      TIGR00425
      Location:31356
      CBF5; rRNA pseudouridine synthase, putative
      pfam01472
      Location:272345
      PUA; PUA domain
      pfam08068
      Location:2481
      DKCLD; DKCLD (NUC011) domain
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