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    K07C5.6 Pre-mRNA-splicing factor SLU7 [ Caenorhabditis elegans ]

    Gene ID: 179443, updated on 9-Sep-2018

    Summary

    Gene symbol
    K07C5.6
    Gene description
    Pre-mRNA-splicing factor SLU7
    Primary source
    WormBase:WBGene00010629
    Locus tag
    CELE_K07C5.6
    Gene type
    protein coding
    RNA name
    Pre-mRNA-splicing factor SLU7
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

    Genomic context

    See K07C5.6 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    4
    Sequence:
    Chromosome: V; NC_003283.11 (10353675..10355815, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nucleolar protein 56 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Epoxide hydrolase 2 Neighboring gene Tubulin Tyrosine Ligase Like

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    contributes_to second spliceosomal transesterification activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    RNA splicing, via transesterification reactions IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Pre-mRNA-splicing factor SLU7
    NP_505661.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      10353675..10355815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_073260.4NP_505661.1  Pre-mRNA-splicing factor SLU7 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_505661.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q21278
      Conserved Domains (2) summary
      pfam00098
      Location:113128
      zf-CCHC; Zinc knuckle
      pfam11708
      Location:156410
      Slu7; Pre-mRNA splicing Prp18-interacting factor
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