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    clpf-1 Protein clpf-1 [ Caenorhabditis elegans ]

    Gene ID: 175442, updated on 19-Aug-2018

    Summary

    Gene symbol
    clpf-1
    Gene description
    Protein clpf-1
    Primary source
    WormBase:WBGene00010304
    Locus tag
    CELE_F59A2.4
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

    Genomic context

    See clpf-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    8
    Sequence:
    Chromosome: III; NC_003281.10 (3397754..3400578)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Myosin regulatory light chain Neighboring gene Conserved regulator of innate immunity protein 3 Neighboring gene Nuclear Pore complex Protein Neighboring gene hypothetical protein

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA polyadenylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide phosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    tRNA splicing, via endonucleolytic cleavage and ligation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Protein clpf-1
    NP_001040858.1
    • Confirmed by transcript evidence
    NP_001040859.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      3397754..3400578
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001047393.2NP_001040858.1  Protein clpf-1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040858.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P52874
      Conserved Domains (4) summary
      COG5623
      Location:6423
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam06807
      Location:313423
      Clp1; Pre-mRNA cleavage complex II protein Clp1
      pfam16573
      Location:9100
      CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor
      pfam16575
      Location:121306
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
    2. NM_001047394.2NP_001040859.1  Protein clpf-1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001040859.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q2EEP3
      Conserved Domains (1) summary
      pfam06807
      Location:180
      Clp1; Pre-mRNA cleavage complex II protein Clp1
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