Format

Send to:

Choose Destination
    • Showing Current items.

    pro-1 Pre-rRNA-processing protein pro-1 [ Caenorhabditis elegans ]

    Gene ID: 174622, updated on 19-Aug-2018

    Summary

    Gene symbol
    pro-1
    Gene description
    Pre-rRNA-processing protein pro-1
    Primary source
    WormBase:WBGene00004185
    Locus tag
    CELE_R166.4
    Gene type
    protein coding
    RNA name
    Pre-rRNA-processing protein pro-1
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

    Genomic context

    See pro-1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    4
    Sequence:
    Chromosome: II; NC_003280.10 (10539549..10541985, complement)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene MAP kinase-interacting serine/threonine-protein kinase mnk-1 Neighboring gene ncRNA

    General gene information

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    germ cell development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    gonad development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    gonadal mesoderm development IEA
    Inferred from Electronic Annotation
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    pre-replicative complex assembly involved in nuclear cell cycle DNA replication IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    rRNA processing IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of DNA-dependent DNA replication initiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ribosomal large subunit assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Rix1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear pre-replicative complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Pre-rRNA-processing protein pro-1
    NP_496271.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      10539549..10541985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_063870.4NP_496271.1  Pre-rRNA-processing protein pro-1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_496271.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q22006
      Conserved Domains (3) summary
      COG2319
      Location:101366
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:142187
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:90326
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Support Center