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    Glcci1 glucocorticoid induced transcript 1 [ Mus musculus (house mouse) ]

    Gene ID: 170772, updated on 7-Aug-2018

    Summary

    Official Symbol
    Glcci1provided by MGI
    Official Full Name
    glucocorticoid induced transcript 1provided by MGI
    Primary source
    MGI:MGI:2179717
    See related
    Ensembl:ENSMUSG00000029638 Vega:OTTMUSG00000030314
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gig18; Tssn1; Fam117c; 2310047L21Rik; A130036A18Rik
    Expression
    Biased expression in thymus adult (RPKM 64.9), testis adult (RPKM 19.8) and 13 other tissues See more
    Orthologs

    Genomic context

    See Glcci1 in Genome Data Viewer
    Location:
    6; 6 A1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (8509600..8597549)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (8459596..8547548)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene UMAP1-MVP12 associated (UMA) domain containing 1 Neighboring gene lysyl-tRNA synthetase pseudogene Neighboring gene RIKEN cDNA A430035B10 gene Neighboring gene F-box protein 5 Neighboring gene predicted gene, 35621 Neighboring gene islet cell autoantigen 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    glucocorticoid-induced transcript 1 protein
    Names
    glucocorticoid-induced gene 18 protein
    testhymin
    thymocyte/spermatocyte selection protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001286728.1NP_001273657.1  glucocorticoid-induced transcript 1 protein isoform 2

      See identical proteins and their annotated locations for NP_001273657.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) includes an alternate 5' terminal exon, initiates translation at a downstream start codon and uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
      Source sequence(s)
      AK029524, AK037672, AV355078, AY098636, CA561411
      Consensus CDS
      CCDS71724.1
      UniProtKB/Swiss-Prot
      Q8K3I9
      UniProtKB/TrEMBL
      A0A0R4J1Z9
      Related
      ENSMUSP00000125079.1, OTTMUSP00000037502, ENSMUST00000162567.7, OTTMUST00000072719
      Conserved Domains (1) summary
      pfam15388
      Location:1281
      FAM117; Protein Family FAM117
    2. NM_001286729.1NP_001273658.1  glucocorticoid-induced transcript 1 protein isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) includes an alternate 5' terminal exon and initiates translation at a downstream start codon, compared to variant 1. It encodes isoform 3, which is shorter at the N-terminus, compared to isoform 1.
      Source sequence(s)
      AK029524, AK037672, AV355078, AY098636
      Consensus CDS
      CCDS71725.1
      UniProtKB/Swiss-Prot
      Q8K3I9
      Related
      ENSMUSP00000124167.1, OTTMUSP00000037503, ENSMUST00000161217.7, OTTMUST00000072720
      Conserved Domains (1) summary
      pfam15388
      Location:1280
      FAM117; Protein Family FAM117
    3. NM_133236.3NP_573499.2  glucocorticoid-induced transcript 1 protein isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AC156290, AK037672, AV355078, AY098636, BG081330, CN720421, DV652660
      Consensus CDS
      CCDS19910.2
      UniProtKB/Swiss-Prot
      Q8K3I9
      UniProtKB/TrEMBL
      E9QKK4
      Related
      ENSMUSP00000069444.8, OTTMUSP00000037459, ENSMUST00000064285.14, OTTMUST00000072677
      Conserved Domains (1) summary
      pfam15388
      Location:159468
      FAM117; Protein Family FAM117

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      8509600..8597549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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