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    CLP1_ANOGA AGAP007701-PA [ Anopheles gambiae str. PEST ]

    Gene ID: 1269532, updated on 28-Apr-2018

    Summary

    Gene symbol
    CLP1_ANOGA
    Gene description
    AGAP007701-PA
    Primary source
    VectorBase:AGAP007701
    Locus tag
    AgaP_AGAP007701
    Gene type
    protein coding
    RNA name
    AGAP007701-RA
    RefSeq status
    PROVISIONAL
    Organism
    Anopheles gambiae str. PEST (strain: PEST)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Old locus tag
    AgaP_ENSANGG00000018277; ENSANGG00000018277

    Genomic context

    See CLP1_ANOGA in Genome Data Viewer
    Location:
    chromosome: 2L
    Exon count:
    2
    Sequence:
    Chromosome: 2L; NT_078265.2 (49136681..49138141, complement)

    Chromosome 2L - NT_078265.2Genomic Context describing neighboring genes Neighboring gene AGAP007698-PA;AGAP007698-PB;AGAP007698-PC Neighboring gene AGAP007699-PA;AGAP007699-PB;AGAP007699-PC Neighboring gene AGAP007700-PA Neighboring gene AGAP007702-PA Neighboring gene AGAP007703-PA Neighboring gene AGAP007704-PA

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • mRNA processing, organism-specific biosystem (from WikiPathways)
      mRNA processing, organism-specific biosystemThis process describes the conversion of precursor messenger RNA into mature messenger RNA (mRNA). The pre-mRNA molecule undergoes three main modifications. These modifications are 5' capping, 3' pol...
    • mRNA surveillance pathway, organism-specific biosystem (from KEGG)
      mRNA surveillance pathway, organism-specific biosystemThe mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go ...
    • mRNA surveillance pathway, conserved biosystem (from KEGG)
      mRNA surveillance pathway, conserved biosystemThe mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go ...

    General gene information

    Homology

    General protein information

    Preferred Names
    AGAP007701-PA
    XP_308174.2
    • AGAP007701-PA encoded by AGAP007701-RA

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_078265.2 Reference assembly

      Range
      49136681..49138141 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_308174.4XP_308174.2  AGAP007701-PA [Anopheles gambiae str. PEST]

      See identical proteins and their annotated locations for XP_308174.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q7QJW7
      Conserved Domains (4) summary
      COG5623
      Location:14421
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam06807
      Location:310421
      Clp1; Pre-mRNA cleavage complex II protein Clp1
      pfam16573
      Location:12105
      CLP1_N; N-terminal beta-sandwich domain of polyadenylation factor
      pfam16575
      Location:119304
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
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