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    si:dkey-21c19.3 si:dkey-21c19.3 [ Danio rerio (zebrafish) ]

    Gene ID: 100007636, updated on 1-Aug-2018

    Summary

    Official Symbol
    si:dkey-21c19.3provided by ZNC
    Official Full Name
    si:dkey-21c19.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6462
    See related
    Ensembl:ENSDARG00000078574 Vega:OTTDARG00000030497
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    fj98g07; wu:fj98g07

    Genomic context

    See si:dkey-21c19.3 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (25769664..25780050, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (25843213..25853508, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor-related protein 1Ab Neighboring gene RNA binding motif, single stranded interacting protein 2b Neighboring gene uncharacterized LOC110438335 Neighboring gene fat storage-inducing transmembrane protein 2

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    cysteine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    protein desumoylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    proteolysis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    sentrin-specific protease 1
    XP_001343517.1
    XP_021329374.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      25769664..25780050 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001343481.8XP_001343517.1  sentrin-specific protease 1

      UniProtKB/TrEMBL
      E7F9B8
      Related
      ENSDARP00000103287.3, OTTDARP00000033618, ENSDART00000110670.4
      Conserved Domains (1) summary
      cl23802
      Location:490726
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395153.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      195574..206086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473699.1XP_021329374.1  sentrin-specific protease 1

      Conserved Domains (1) summary
      COG5160
      Location:505728
      ULP1; Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
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