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    AT2G24830 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817020, updated on 11-Oct-2018

    Summary

    Gene symbol
    AT2G24830
    Gene description
    zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein
    Primary source
    Araport:AT2G24830
    Locus tag
    AT2G24830
    Gene type
    protein coding
    RNA name
    zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27C12.25; F27C12_25

    Genomic context

    See AT2G24830 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (10576856..10579230, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pathogenesis-related thaumatin superfamily protein Neighboring gene translocon at the inner envelope membrane of chloroplasts 55-II Neighboring gene ncRNA Neighboring gene AGAMOUS-like 61 Neighboring gene tyrosine aminotransferase 3

    General gene information

    Homology

    NM_128042.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    intracellular ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein
    NP_180056.1
    • zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), D111/G-patch (InterPro:IPR000467); Has 706 Blast hits to 687 proteins in 197 species: Archae - 0; Bacteria - 4; Metazoa - 400; Fungi - 113; Plants - 123; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10576856..10579230 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128042.4NP_180056.1  zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180056.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SK49
      Conserved Domains (2) summary
      smart00356
      Location:136162
      ZnF_C3H1; zinc finger
      pfam01585
      Location:300343
      G-patch; G-patch domain
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