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    gtf2ird1 GTF2I repeat domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 81597, updated on 3-Oct-2019

    Summary

    Official Symbol
    gtf2ird1provided by ZNC
    Official Full Name
    GTF2I repeat domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-010328-18
    See related
    Ensembl:ENSDARG00000022203
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    si:dkey-32e10.2; si:dkey-32e10.4-001
    Orthologs

    Genomic context

    See gtf2ird1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (59493893..59548943)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (58824171..58879496)
    103 previous assembly Zv9 (GCF_000002035.4) 5 NC_007116.5 (61192076..61247726)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene RAS p21 protein activator 4 Neighboring gene CAP-GLY domain containing linker protein 2 Neighboring gene deltex 2, E3 ubiquitin ligase Neighboring gene uncharacterized LOC108190127

    Genomic regions, transcripts, and products

    General gene information

    Homology

    General protein information

    Preferred Names
    general transcription factor II-I repeat domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      59493893..59548943
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476657.1XP_021332332.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      Conserved Domains (1) summary
      pfam02946
      Location:579651
      GTF2I; GTF2I-like repeat
    2. XM_021476660.1XP_021332335.1  general transcription factor II-I repeat domain-containing protein 1 isoform X3

      Conserved Domains (1) summary
      pfam02946
      Location:579651
      GTF2I; GTF2I-like repeat
    3. XM_021476659.1XP_021332334.1  general transcription factor II-I repeat domain-containing protein 1 isoform X2

      Related
      ENSDARP00000123826.2, ENSDART00000148727.3
      Conserved Domains (1) summary
      pfam02946
      Location:578650
      GTF2I; GTF2I-like repeat
    4. XM_021476658.1XP_021332333.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      Conserved Domains (1) summary
      pfam02946
      Location:579651
      GTF2I; GTF2I-like repeat

    RNA

    1. XR_002458970.1 RNA Sequence

    2. XR_002458969.1 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394620.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      120858..175908
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005172018.4XP_005172075.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005172075.1

      Conserved Domains (1) summary
      pfam02946
      Location:579651
      GTF2I; GTF2I-like repeat
    2. XM_005172020.4XP_005172077.1  general transcription factor II-I repeat domain-containing protein 1 isoform X3

      Conserved Domains (1) summary
      pfam02946
      Location:579651
      GTF2I; GTF2I-like repeat
    3. XM_003198705.5XP_003198753.2  general transcription factor II-I repeat domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      E7F1R4
      Conserved Domains (1) summary
      pfam02946
      Location:578650
      GTF2I; GTF2I-like repeat
    4. XM_005172019.4XP_005172076.1  general transcription factor II-I repeat domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005172076.1

      Conserved Domains (1) summary
      pfam02946
      Location:579651
      GTF2I; GTF2I-like repeat

    RNA

    1. XR_661748.3 RNA Sequence

    2. XR_661747.3 RNA Sequence

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