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    CLEC10A C-type lectin domain containing 10A [ Pan troglodytes (chimpanzee) ]

    Gene ID: 748824, updated on 23-Mar-2018

    Summary

    Official Symbol
    CLEC10Aprovided by VGNC
    Official Full Name
    C-type lectin domain containing 10Aprovided by VGNC
    Primary source
    VGNC:VGNC:9236
    See related
    Ensembl:ENSPTRG00000008659
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See CLEC10A in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 17 NC_036896.1 (6768552..6774942, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 17 NC_006484.3 (7128627..7134296, complement)

    Chromosome 17 - NC_036896.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 member 13 Neighboring gene solute carrier family 16 member 11 Neighboring gene asialoglycoprotein receptor 2 Neighboring gene uncharacterized LOC112206027

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    General protein information

    Preferred Names
    C-type lectin domain family 10 member A
    Names
    C-type lectin, superfamily member 14

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036896.1 Reference Clint_PTRv2 Primary Assembly

      Range
      6768552..6774942 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016931393.2XP_016786882.1  C-type lectin domain family 10 member A isoform X5

    2. XM_009431719.3XP_009429994.1  C-type lectin domain family 10 member A isoform X1

      Conserved Domains (2) summary
      cd03590
      Location:184308
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:18170
      Lectin_N; Hepatic lectin, N-terminal domain
    3. XM_009431720.3XP_009429995.1  C-type lectin domain family 10 member A isoform X2

      UniProtKB/TrEMBL
      H2R0E0
      Related
      ENSPTRP00000040577.3
      Conserved Domains (2) summary
      cd03590
      Location:181305
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:18170
      Lectin_N; Hepatic lectin, N-terminal domain
    4. XM_001168677.5XP_001168677.1  C-type lectin domain family 10 member A isoform X3

      Conserved Domains (2) summary
      cd03590
      Location:157281
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:18143
      Lectin_N; Hepatic lectin, N-terminal domain
    5. XM_009431721.3XP_009429996.1  C-type lectin domain family 10 member A isoform X4

      Conserved Domains (2) summary
      cd03590
      Location:154278
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      pfam03954
      Location:18143
      Lectin_N; Hepatic lectin, N-terminal domain
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