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    Pnma1 paraneoplastic antigen MA1 [ Mus musculus (house mouse) ]

    Gene ID: 70481, updated on 22-May-2018

    Summary

    Official Symbol
    Pnma1provided by MGI
    Official Full Name
    paraneoplastic antigen MA1provided by MGI
    Primary source
    MGI:MGI:2180564
    See related
    Ensembl:ENSMUSG00000054383 Vega:OTTMUSG00000037648
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    5730402C15Rik
    Orthologs

    Genomic context

    See Pnma1 in Genome Data Viewer
    Location:
    12; 12 D1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (84146131..84148489, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (85487081..85489439, complement)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene acyl-CoA thioesterase 6 Neighboring gene dynein, axonemal, light chain 1 Neighboring gene ELM2 and Myb/SANT-like domain containing 1 Neighboring gene predicted gene, 46368 Neighboring gene predicted gene, 40476

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC144789, MGC144790

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    inflammatory response to antigenic stimulus ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    paraneoplastic antigen Ma1 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027438.3NP_081714.2  paraneoplastic antigen Ma1 homolog

      See identical proteins and their annotated locations for NP_081714.2

      Status: VALIDATED

      Source sequence(s)
      AK136933, BM939442
      Consensus CDS
      CCDS26040.1
      UniProtKB/Swiss-Prot
      Q8C1C8
      Related
      ENSMUSP00000060783.2, OTTMUSP00000054432, ENSMUST00000061425.2, OTTMUST00000097167
      Conserved Domains (1) summary
      pfam14893
      Location:1324
      PNMA; PNMA

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      84146131..84148489 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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