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    Ubxn11 UBX domain protein 11 [ Mus musculus (house mouse) ]

    Gene ID: 67586, updated on 8-Dec-2018

    Summary

    Official Symbol
    Ubxn11provided by MGI
    Official Full Name
    UBX domain protein 11provided by MGI
    Primary source
    MGI:MGI:1914836
    See related
    Ensembl:ENSMUSG00000012126
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Soc; Soci; Ubxd5; D4Bwg1540e; 4930506L07Rik
    Expression
    Biased expression in testis adult (RPKM 53.9), thymus adult (RPKM 6.2) and 9 other tissues See more
    Orthologs

    Genomic context

    See Ubxn11 in Genome Data Viewer
    Location:
    4 D3; 4 66.5 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (134102520..134126784)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (133658514..133682693)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene crystallin beta-gamma domain containing 2 Neighboring gene CD52 antigen Neighboring gene SH3 domain binding glutamic acid-rich protein-like 3 Neighboring gene centrosomal protein 85 Neighboring gene predicted gene, 46894

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ubiquitin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    proteasome-mediated ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    UBX domain-containing protein 11
    Names
    UBX domain containing 5
    UBX domain-containing protein 5
    socius

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026257.3NP_080533.1  UBX domain-containing protein 11

      See identical proteins and their annotated locations for NP_080533.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer, protein-coding transcript.
      Source sequence(s)
      AK048494, AL670680
      Consensus CDS
      CCDS18763.1
      UniProtKB/Swiss-Prot
      Q9D572
      Related
      ENSMUSP00000074255.4, ENSMUST00000074690.10
      Conserved Domains (3) summary
      pfam08059
      Location:232302
      SEP; SEP domain
      cl00155
      Location:394461
      UBQ; Ubiquitin-like proteins
      cl21454
      Location:172225
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    RNA

    1. NR_045571.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1, that causes a frameshift. The resulting transcript is a candidate for nonsense-mediated mRNA decay (NMD) and is thought not to be protein-coding.
      Source sequence(s)
      AK048494, AL670680
      Related
      ENSMUST00000156323.7

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      134102520..134126784
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006539127.3XP_006539190.1  UBX domain-containing protein 11 isoform X6

      Conserved Domains (1) summary
      cl02662
      Location:271294
      SEP; SEP domain
    2. XM_017320364.1XP_017175853.1  UBX domain-containing protein 11 isoform X1

      Conserved Domains (3) summary
      pfam08059
      Location:271341
      SEP; SEP domain
      cl00155
      Location:433500
      UBQ; Ubiquitin-like proteins
      cl21454
      Location:211264
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    3. XM_006539124.3XP_006539187.1  UBX domain-containing protein 11 isoform X4

      Related
      ENSMUSP00000064030.2, ENSMUST00000070246.8
      Conserved Domains (2) summary
      pfam08059
      Location:153223
      SEP; SEP domain
      cl00155
      Location:315382
      UBQ; Ubiquitin-like proteins
    4. XM_017320365.1XP_017175854.1  UBX domain-containing protein 11 isoform X7

    5. XM_006539123.2XP_006539186.1  UBX domain-containing protein 11 isoform X3

      See identical proteins and their annotated locations for XP_006539186.1

      Conserved Domains (3) summary
      pfam08059
      Location:159229
      SEP; SEP domain
      cl00155
      Location:321388
      UBQ; Ubiquitin-like proteins
      cl21454
      Location:99152
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    6. XM_011250325.2XP_011248627.1  UBX domain-containing protein 11 isoform X2

      Conserved Domains (3) summary
      pfam08059
      Location:202272
      SEP; SEP domain
      cl00155
      Location:364431
      UBQ; Ubiquitin-like proteins
      cl21454
      Location:142195
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    7. XM_006539126.2XP_006539189.1  UBX domain-containing protein 11 isoform X5

      Conserved Domains (3) summary
      pfam08059
      Location:76146
      SEP; SEP domain
      cl00155
      Location:238305
      UBQ; Ubiquitin-like proteins
      cl21454
      Location:1669
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    8. XM_006539122.2XP_006539185.1  UBX domain-containing protein 11 isoform X3

      See identical proteins and their annotated locations for XP_006539185.1

      Conserved Domains (3) summary
      pfam08059
      Location:159229
      SEP; SEP domain
      cl00155
      Location:321388
      UBQ; Ubiquitin-like proteins
      cl21454
      Location:99152
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    9. XM_011250326.2XP_011248628.1  UBX domain-containing protein 11 isoform X3

      See identical proteins and their annotated locations for XP_011248628.1

      Conserved Domains (3) summary
      pfam08059
      Location:159229
      SEP; SEP domain
      cl00155
      Location:321388
      UBQ; Ubiquitin-like proteins
      cl21454
      Location:99152
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    RNA

    1. XR_390778.3 RNA Sequence

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