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    SUMO1 small ubiquitin-like modifier 1 [ Bos taurus (cattle) ]

    Gene ID: 614967, updated on 2-Oct-2018

    Summary

    Official Symbol
    SUMO1provided by VGNC
    Official Full Name
    small ubiquitin-like modifier 1provided by VGNC
    Primary source
    VGNC:VGNC:35473
    See related
    BGD:BT28877; Ensembl:ENSBTAG00000009859
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See SUMO1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 2 NC_037329.1 (90738597..90764593, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 2 AC_000159.1 (91155252..91180862, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S15a pseudogene Neighboring gene frizzled class receptor 7 Neighboring gene KIAA2012 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene small nucleolar RNA SNORD70 Neighboring gene small nucleolar RNA SNORD70 Neighboring gene NOP58 ribonucleoprotein

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Clone Names

    • MGC128420

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    potassium channel regulator activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    transcription factor binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    ubiquitin protein ligase binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    PML body organization IEA
    Inferred from Electronic Annotation
    more info
     
    cellular response to cadmium ion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular response to heat ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    negative regulation of action potential ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    negative regulation of delayed rectifier potassium channel activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of calcium-transporting ATPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein localization to nuclear pore IEA
    Inferred from Electronic Annotation
    more info
     
    protein sumoylation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    regulation of cardiac muscle cell contraction IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of protein stability IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    roof of mouth development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    PML body ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    XY body IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear speck IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear stress granule ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    colocalizes_with voltage-gated potassium channel complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    small ubiquitin-related modifier 1
    Names
    SMT3 suppressor of mif two 3 homolog 1
    SUMO-1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035458.1NP_001030535.1  small ubiquitin-related modifier 1 precursor

      See identical proteins and their annotated locations for NP_001030535.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020989
      UniProtKB/Swiss-Prot
      Q5E9D1
      Related
      ENSBTAP00000013000.2, ENSBTAT00000013000.2
      Conserved Domains (1) summary
      cd01763
      Location:1197
      Sumo; Small ubiquitin-related modifier (SUMO)

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      90738597..90764593 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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