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    Cnot9 CCR4-NOT transcription complex, subunit 9 [ Mus musculus (house mouse) ]

    Gene ID: 58184, updated on 8-Jul-2018
    Official Symbol
    Cnot9provided by MGI
    Official Full Name
    CCR4-NOT transcription complex, subunit 9provided by MGI
    Primary source
    MGI:MGI:1928902
    See related
    Ensembl:ENSMUSG00000026174 Vega:OTTMUSG00000021742
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fl10; Rqcd1; AI593551; 2610007F23Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 22.1), limb E14.5 (RPKM 19.1) and 28 other tissues See more
    Orthologs
    See Cnot9 in Genome Data Viewer
    Location:
    1; 1 C3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 1 NC_000067.6 (74506040..74530842)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (74552634..74577416)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 Neighboring gene microRNA 26b Neighboring gene villin 1 Neighboring gene ubiquitin specific peptidase 37 Neighboring gene phospholipase C, delta 4 Neighboring gene zinc finger protein 142

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    epidermal growth factor receptor binding ISO
    Inferred from Sequence Orthology
    more info
     
    kinase binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    cytokine-mediated signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    gene silencing by RNA IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of intracellular estrogen receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    negative regulation of translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of epidermal growth factor receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of nuclear receptor transcription coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of peptidyl-serine phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of translation IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    CCR4-NOT complex ISO
    Inferred from Sequence Orthology
    more info
     
    CCR4-NOT core complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    P-body IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    P-body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    CCR4-NOT transcription complex subunit 9; cell differentiation protein RCD1 homolog
    Names
    EPO-induced protein FL10
    RCD1 required for cell differentiation 1 homolog
    cell differentiation protein RQCD1 homolog
    rcd-1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021383.5NP_067358.1  CCR4-NOT transcription complex subunit 9

      See identical proteins and their annotated locations for NP_067358.1

      Status: VALIDATED

      Source sequence(s)
      BC050898, BC051948, BY705231
      Consensus CDS
      CCDS35615.1
      UniProtKB/Swiss-Prot
      Q9JKY0
      Related
      ENSMUSP00000084466.5, OTTMUSP00000024312, ENSMUST00000087215.6, OTTMUST00000051585
      Conserved Domains (1) summary
      pfam04078
      Location:25283
      Rcd1; Cell differentiation family, Rcd1-like

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p4 C57BL/6J

      Range
      74506040..74530842
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006496171.2XP_006496234.1  cell differentiation protein RCD1 homolog isoform X1

      See identical proteins and their annotated locations for XP_006496234.1

      Conserved Domains (1) summary
      pfam04078
      Location:1229
      Rcd1; Cell differentiation family, Rcd1-like
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