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    GOLGA2P5 GOLGA2 pseudogene 5 [ Homo sapiens (human) ]

    Gene ID: 55592, updated on 10-Dec-2024

    Summary

    Official Symbol
    GOLGA2P5provided by HGNC
    Official Full Name
    GOLGA2 pseudogene 5provided by HGNC
    Primary source
    HGNC:HGNC:25315
    See related
    Ensembl:ENSG00000290576 AllianceGenome:HGNC:25315
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    GOLGA2B; GOLGA2L1
    Expression
    Broad expression in testis (RPKM 4.5), duodenum (RPKM 2.8) and 24 other tissues See more
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    Genomic context

    See GOLGA2P5 in Genome Data Viewer
    Location:
    12q23.1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (100156391..100173343, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (100117626..100134578, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (100550169..100567121, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:100536197-100536960 Neighboring gene BLTP3B divergent transcript Neighboring gene NANOG hESC enhancer GRCh37_chr12:100540373-100541181 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:100546825-100547326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6851 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6852 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:100550146-100551035 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:100551036-100551924 Neighboring gene dynamin 1 pseudogene 19 Neighboring gene RNA, 7SL, cytoplasmic 176, pseudogene Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:100556980-100557712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:100559806-100560306 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6853 Neighboring gene microRNA 1827 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4764 Neighboring gene Sharpr-MPRA regulatory region 7946 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6854 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:100595701-100596388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:100596389-100597074 Neighboring gene actin related protein 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • golgi autoantigen, golgin subfamily a, 2-like 1
    • golgin A2 family, member B
    • golgin A2 pseudogene 5
    • golgin A2-like 1
    • golgin subfamily A member 2B

    Clone Names

    • DKFZp434A0411, DKFZp434K1926, DKFZp434M0331

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024261.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains different exon structure in the 3' region, compared to variant 1. Additional exon structure may be present in the 5' region, but the 5' exon structure cannot be determined due to lack of 5'-complete transcript support for this variant, and the presence of ambiguous splicing among other 5' end transcripts.
      Source sequence(s)
      AL137680, BC048272, BQ366018
    2. NR_036632.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript. Additional exon structure may be present in the 5' region, but the 5' exon structure cannot be determined due to lack of 5'-complete transcript support for this variant, and the presence of ambiguous splicing among other 5' end transcripts.
      Source sequence(s)
      AF217995, BQ366018, BX647364
      Related
      ENST00000716772.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      100156391..100173343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      100117626..100134578 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_017600.1: Suppressed sequence

      Description
      NM_017600.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.