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    ddx39a DEAD-box helicase 39A [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548754, updated on 20-Jun-2018

    Summary

    Symbol
    ddx39aprovided by Xenbase
    Full Name
    DEAD-box helicase 39Aprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-966447
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    bat1; ddxl; bat1l; ddx39; dxd39

    Genomic context

    See ddx39a in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (124210277..124218300, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668254.1 (372622..380645, complement)

    Chromosome 3 - NC_030679.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor L1 Neighboring gene adhesion G protein-coupled receptor E2-like Neighboring gene adhesion G protein-coupled receptor E5 Neighboring gene protein kinase N1 Neighboring gene prostaglandin E receptor 1

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    General protein information

    Preferred Names
    ATP-dependent RNA helicase DDX39A
    Names
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A
    NP_001016000.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016000.2NP_001016000.1  ATP-dependent RNA helicase DDX39A

      See identical proteins and their annotated locations for NP_001016000.1

      Status: PROVISIONAL

      Source sequence(s)
      CR848283
      UniProtKB/TrEMBL
      Q28EE7
      Conserved Domains (3) summary
      PTZ00424
      Location:33417
      PTZ00424; helicase 45; Provisional
      cd00079
      Location:263389
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:46249
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030679.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      124210277..124218300 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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