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    LHX6 LIM homeobox 6 [ Bos taurus (cattle) ]

    Gene ID: 541261, updated on 27-Aug-2018

    Summary

    Official Symbol
    LHX6provided by VGNC
    Official Full Name
    LIM homeobox 6provided by VGNC
    Primary source
    VGNC:VGNC:30876
    See related
    BGD:BT19163; Ensembl:ENSBTAG00000005525
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See LHX6 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 11 NC_037338.1 (93083904..93109821, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 11 AC_000168.1 (93066823..93090348, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit A8 Neighboring gene MORN repeat containing 5 Neighboring gene RNA binding motif protein 18 Neighboring gene mitochondrial ribosome recycling factor Neighboring gene uncharacterized LOC104973468 Neighboring gene prostaglandin-endoperoxide synthase 1

    Genomic regions, transcripts, and products

    General gene information

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192848.1NP_001179777.1  LIM/homeobox protein Lhx6

      See identical proteins and their annotated locations for NP_001179777.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000011
      UniProtKB/TrEMBL
      E1B8I6
      Related
      ENSBTAP00000007266.3, ENSBTAT00000007266.3
      Conserved Domains (3) summary
      cd09380
      Location:99152
      LIM1_Lhx6; The first LIM domain of Lhx6
      cd09382
      Location:160214
      LIM2_Lhx6; The second LIM domain of Lhx6
      pfam00046
      Location:252304
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      93083904..93109821 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005213032.4XP_005213089.1  LIM/homeobox protein Lhx6 isoform X1

      See identical proteins and their annotated locations for XP_005213089.1

      Conserved Domains (3) summary
      cd09380
      Location:99152
      LIM1_Lhx6; The first LIM domain of Lhx6
      cd09382
      Location:160214
      LIM2_Lhx6; The second LIM domain of Lhx6
      pfam00046
      Location:252304
      Homeobox; Homeobox domain
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