Format

Send to:

Choose Destination
    • Showing Current items.

    SSBP4 single stranded DNA binding protein 4 [ Bos taurus (cattle) ]

    Gene ID: 508156, updated on 27-Aug-2018

    Summary

    Official Symbol
    SSBP4provided by VGNC
    Official Full Name
    single stranded DNA binding protein 4provided by VGNC
    Primary source
    VGNC:VGNC:50021
    See related
    Ensembl:ENSBTAG00000003947
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See SSBP4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 7 NC_037334.1 (4741033..4757679, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 7 AC_000164.1 (4672930..4688983, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112447323 Neighboring gene elongation factor for RNA polymerase II Neighboring gene inositol-3-phosphate synthase 1 Neighboring gene uncharacterized LOC101908182 Neighboring gene leucine rich repeat containing 25 Neighboring gene growth differentiation factor 15

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Clone Names

    • MGC128808

    General protein information

    Preferred Names
    single-stranded DNA-binding protein 4

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035273.2NP_001030350.1  single-stranded DNA-binding protein 4

      See identical proteins and their annotated locations for NP_001030350.1

      Status: PROVISIONAL

      Source sequence(s)
      BC107552
      UniProtKB/TrEMBL
      Q3B7L7
      Related
      ENSBTAP00000005153.5, ENSBTAT00000005153.5
      Conserved Domains (2) summary
      smart00667
      Location:1844
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82338
      SSDP; Single-stranded DNA binding protein, SSDP

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      4741033..4757679 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024994015.1XP_024849783.1  single-stranded DNA-binding protein 4 isoform X8

      Conserved Domains (1) summary
      pfam04503
      Location:106393
      SSDP; Single-stranded DNA binding protein, SSDP
    2. XM_024994018.1XP_024849786.1  single-stranded DNA-binding protein 4 isoform X11

      Conserved Domains (2) summary
      smart00667
      Location:1844
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82365
      SSDP; Single-stranded DNA binding protein, SSDP
    3. XM_024994017.1XP_024849785.1  single-stranded DNA-binding protein 4 isoform X10

      Conserved Domains (2) summary
      smart00667
      Location:1844
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82369
      SSDP; Single-stranded DNA binding protein, SSDP
    4. XM_024994026.1XP_024849794.1  single-stranded DNA-binding protein 4 isoform X18

      Conserved Domains (2) summary
      smart00667
      Location:1844
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82387
      SSDP; Single-stranded DNA binding protein, SSDP
    5. XM_024994019.1XP_024849787.1  single-stranded DNA-binding protein 4 isoform X12

      Conserved Domains (2) summary
      smart00667
      Location:1844
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82360
      SSDP; Single-stranded DNA binding protein, SSDP
    6. XM_024994021.1XP_024849789.1  single-stranded DNA-binding protein 4 isoform X13

      Conserved Domains (2) summary
      smart00667
      Location:1844
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82347
      SSDP; Single-stranded DNA binding protein, SSDP
    7. XM_024994007.1XP_024849775.1  single-stranded DNA-binding protein 4 isoform X1

      Conserved Domains (1) summary
      pfam04503
      Location:151438
      SSDP; Single-stranded DNA binding protein, SSDP
    8. XM_024994008.1XP_024849776.1  single-stranded DNA-binding protein 4 isoform X2

      Conserved Domains (1) summary
      pfam04503
      Location:151456
      SSDP; Single-stranded DNA binding protein, SSDP
    9. XM_024994014.1XP_024849782.1  single-stranded DNA-binding protein 4 isoform X7

      Conserved Domains (1) summary
      pfam04503
      Location:151404
      SSDP; Single-stranded DNA binding protein, SSDP
    10. XM_024994011.1XP_024849779.1  single-stranded DNA-binding protein 4 isoform X4

      Conserved Domains (1) summary
      pfam04503
      Location:151416
      SSDP; Single-stranded DNA binding protein, SSDP
    11. XM_024994010.1XP_024849778.1  single-stranded DNA-binding protein 4 isoform X3

      Conserved Domains (1) summary
      pfam04503
      Location:151429
      SSDP; Single-stranded DNA binding protein, SSDP
    12. XM_024994012.1XP_024849780.1  single-stranded DNA-binding protein 4 isoform X5

      Conserved Domains (1) summary
      pfam04503
      Location:151407
      SSDP; Single-stranded DNA binding protein, SSDP
    13. XM_024994024.1XP_024849792.1  single-stranded DNA-binding protein 4 isoform X16

      Conserved Domains (1) summary
      pfam04503
      Location:48335
      SSDP; Single-stranded DNA binding protein, SSDP
    14. XM_024994025.1XP_024849793.1  single-stranded DNA-binding protein 4 isoform X17

      Conserved Domains (2) summary
      smart00667
      Location:1844
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82313
      SSDP; Single-stranded DNA binding protein, SSDP
    15. XM_024994023.1XP_024849791.1  single-stranded DNA-binding protein 4 isoform X15

      Conserved Domains (2) summary
      smart00667
      Location:1844
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82338
      SSDP; Single-stranded DNA binding protein, SSDP
    16. XM_024994016.1XP_024849784.1  single-stranded DNA-binding protein 4 isoform X9

      Conserved Domains (1) summary
      pfam04503
      Location:151407
      SSDP; Single-stranded DNA binding protein, SSDP
    17. XM_024994022.1XP_024849790.1  single-stranded DNA-binding protein 4 isoform X14

      Conserved Domains (2) summary
      smart00667
      Location:1844
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82365
      SSDP; Single-stranded DNA binding protein, SSDP
    18. XM_024994013.1XP_024849781.1  single-stranded DNA-binding protein 4 isoform X6

      Conserved Domains (1) summary
      pfam04503
      Location:151429
      SSDP; Single-stranded DNA binding protein, SSDP
    Support Center