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    Wdfy4 WDFY family member 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498582, updated on 13-Aug-2019

    Summary

    Official Symbol
    Wdfy4provided by RGD
    Official Full Name
    WDFY family member 4provided by RGD
    Primary source
    RGD:1564142
    See related
    Ensembl:ENSRNOG00000029662
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564142
    Expression
    Biased expression in Spleen (RPKM 279.2), Thymus (RPKM 89.5) and 4 other tissues See more
    Orthologs

    Genomic context

    See Wdfy4 in Genome Data Viewer
    Location:
    16p16
    Exon count:
    64
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (9194446..9430764, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 16 NC_005115.3 (11157412..11391121, complement)

    Chromosome 16 - NC_005115.4Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 170, member B Neighboring gene V-set and transmembrane domain containing 4 Neighboring gene leucine rich repeat containing 18 Neighboring gene Rho GTPase activating protein 22 Neighboring gene mitogen-activated protein kinase 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    WD repeat- and FYVE domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005115.4 Reference Rnor_6.0 Primary Assembly

      Range
      9194446..9430764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006252762.3XP_006252824.1  WD repeat- and FYVE domain-containing protein 4 isoform X2

      Conserved Domains (5) summary
      COG2319
      Location:28613180
      WD40; WD40 repeat [General function prediction only]
      cd01201
      Location:23902514
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:25422823
      Beach; Beige/BEACH domain
      sd00039
      Location:29332976
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:28983096
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. XM_006252759.2XP_006252821.1  WD repeat- and FYVE domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_006252821.1

      UniProtKB/TrEMBL
      D4A748
      Related
      ENSRNOP00000042082.5, ENSRNOT00000043811.5
      Conserved Domains (5) summary
      COG2319
      Location:28653187
      WD40; WD40 repeat [General function prediction only]
      cd01201
      Location:23902514
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:25422823
      Beach; Beige/BEACH domain
      sd00039
      Location:29402983
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:29053103
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    3. XM_008771159.1XP_008769381.1  WD repeat- and FYVE domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_008769381.1

      UniProtKB/TrEMBL
      D4A748
      Conserved Domains (5) summary
      COG2319
      Location:28653187
      WD40; WD40 repeat [General function prediction only]
      cd01201
      Location:23902514
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:25422823
      Beach; Beige/BEACH domain
      sd00039
      Location:29402983
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:29053103
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    4. XM_006252760.3XP_006252822.1  WD repeat- and FYVE domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_006252822.1

      UniProtKB/TrEMBL
      D4A748
      Conserved Domains (5) summary
      COG2319
      Location:28653187
      WD40; WD40 repeat [General function prediction only]
      cd01201
      Location:23902514
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:25422823
      Beach; Beige/BEACH domain
      sd00039
      Location:29402983
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:29053103
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    Alternate Rn_Celera

    Genomic

    1. AC_000084.1 Alternate Rn_Celera

      Range
      6784539..6984311
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006222110.2XP_006222172.1  WD repeat- and FYVE domain-containing protein 4 isoform X3

      Conserved Domains (5) summary
      COG2319
      Location:27923114
      WD40; WD40 repeat [General function prediction only]
      cd01201
      Location:23172441
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:24692750
      Beach; Beige/BEACH domain
      sd00039
      Location:28672910
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:28323030
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. XM_006222112.2XP_006222174.1  WD repeat- and FYVE domain-containing protein 4 isoform X5

      Conserved Domains (5) summary
      COG2319
      Location:27883107
      WD40; WD40 repeat [General function prediction only]
      cd01201
      Location:23172441
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:24692750
      Beach; Beige/BEACH domain
      sd00039
      Location:28602903
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:28253023
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    3. XM_006222111.2XP_006222173.1  WD repeat- and FYVE domain-containing protein 4 isoform X4

      Conserved Domains (5) summary
      COG2319
      Location:27893111
      WD40; WD40 repeat [General function prediction only]
      cd01201
      Location:23142438
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      pfam02138
      Location:24662747
      Beach; Beige/BEACH domain
      sd00039
      Location:28642907
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:28293027
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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