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    pld3 phospholipase D family member 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496432, updated on 15-Nov-2019

    Summary

    Symbol
    pld3provided by Xenbase
    Full Name
    phospholipase D family member 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1006824
    See related
    Ensembl:ENSXETG00000011476
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs

    Genomic context

    See pld3 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (56738585..56761554, complement)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668241.1 (78375780..78398741, complement)

    Chromosome 8 - NC_030684.1Genomic Context describing neighboring genes Neighboring gene latent-transforming growth factor beta-binding protein 1-like Neighboring gene uncharacterized LOC101734989 Neighboring gene biliverdin reductase B Neighboring gene chromosome 19 open reading frame 47 Neighboring gene estrogen-related receptor gamma-related

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    General protein information

    Preferred Names
    phospholipase D3
    Names
    PLD 3
    choline phosphatase 3
    phosphatidylcholine-hydrolyzing phospholipase D3
    NP_001011023.1
    XP_012823737.1
    XP_012823738.1
    XP_012823739.1
    XP_012823740.1
    XP_017951719.1
    XP_017951720.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011023.1NP_001011023.1  phospholipase D3

      See identical proteins and their annotated locations for NP_001011023.1

      Status: PROVISIONAL

      Source sequence(s)
      BC082717
      UniProtKB/Swiss-Prot
      Q640B3
      Related
      ENSXETP00000009553.1, ENSXETT00000021354.1
      Conserved Domains (2) summary
      cl15239
      Location:293479
      PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
      cl28150
      Location:79479
      PLDc; Phospholipase D Active site motif

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030684.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      56738585..56761554 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012968284.2XP_012823738.1  phospholipase D3 isoform X1

      See identical proteins and their annotated locations for XP_012823738.1

      Conserved Domains (3) summary
      PHA03003
      Location:92492
      PHA03003; palmytilated EEV membrane glycoprotein; Provisional
      cd09144
      Location:95266
      PLDc_vPLD3_1; Putative catalytic domain, repeat 1, of vertebrate phospholipase PLD3
      cl15239
      Location:302488
      PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
    2. XM_018096231.1XP_017951720.1  phospholipase D3 isoform X2

      Related
      ENSXETP00000031513.1, ENSXETT00000034912.1
    3. XM_012968283.1XP_012823737.1  phospholipase D3 isoform X1

      See identical proteins and their annotated locations for XP_012823737.1

      Related
      ENSXETP00000009562.1, ENSXETT00000021365.1
      Conserved Domains (3) summary
      PHA03003
      Location:92492
      PHA03003; palmytilated EEV membrane glycoprotein; Provisional
      cd09144
      Location:95266
      PLDc_vPLD3_1; Putative catalytic domain, repeat 1, of vertebrate phospholipase PLD3
      cl15239
      Location:302488
      PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
    4. XM_018096230.1XP_017951719.1  phospholipase D3 isoform X1

    5. XM_012968285.2XP_012823739.1  phospholipase D3 isoform X1

      See identical proteins and their annotated locations for XP_012823739.1

      Conserved Domains (3) summary
      PHA03003
      Location:92492
      PHA03003; palmytilated EEV membrane glycoprotein; Provisional
      cd09144
      Location:95266
      PLDc_vPLD3_1; Putative catalytic domain, repeat 1, of vertebrate phospholipase PLD3
      cl15239
      Location:302488
      PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
    6. XM_012968286.2XP_012823740.1  phospholipase D3 isoform X1

      See identical proteins and their annotated locations for XP_012823740.1

      Conserved Domains (3) summary
      PHA03003
      Location:92492
      PHA03003; palmytilated EEV membrane glycoprotein; Provisional
      cd09144
      Location:95266
      PLDc_vPLD3_1; Putative catalytic domain, repeat 1, of vertebrate phospholipase PLD3
      cl15239
      Location:302488
      PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
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