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    ATG16L1 autophagy related 16 like 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 477412, updated on 26-Sep-2018

    Summary

    Official Symbol
    ATG16L1provided by VGNC
    Official Full Name
    autophagy related 16 like 1provided by VGNC
    Primary source
    VGNC:VGNC:38219
    See related
    Ensembl:ENSCAFG00000011752
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs

    Genomic context

    See ATG16L1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) 25 NC_006607.3 (44761034..44800033)

    Chromosome 25 - NC_006607.3Genomic Context describing neighboring genes Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene uncharacterized LOC111092487 Neighboring gene S-antigen visual arrestin Neighboring gene diacylglycerol kinase delta

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006607.3 Chromosome 25 Reference CanFam3.1 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Autophagy - animal, organism-specific biosystem (from KEGG)
      Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - animal, conserved biosystem (from KEGG)
      Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
    • Autophagy - other, organism-specific biosystem (from KEGG)
      Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Autophagy - other, conserved biosystem (from KEGG)
      Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
    • Cellular responses to stress, organism-specific biosystem (from REACTOME)
      Cellular responses to stress, organism-specific biosystemcomputationally inferred pathway (not manually curated)
    • Macroautophagy, organism-specific biosystem (from REACTOME)
      Macroautophagy, organism-specific biosystemcomputationally inferred pathway (not manually curated)
    • NOD-like receptor signaling pathway, organism-specific biosystem (from KEGG)
      NOD-like receptor signaling pathway, organism-specific biosystemSpecific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains mo...
    • NOD-like receptor signaling pathway, conserved biosystem (from KEGG)
      NOD-like receptor signaling pathway, conserved biosystemSpecific families of pattern recognition receptors are responsible for detecting various pathogens and generating innate immune responses. The intracellular NOD-like receptor (NLR) family contains mo...

    General gene information

    Homology

    General protein information

    Preferred Names
    autophagy-related protein 16-1
    Names
    ATG16 autophagy related 16-like 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006607.3 Reference CanFam3.1 Primary Assembly

      Range
      44761034..44800033
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005635866.3XP_005635923.1  autophagy-related protein 16-1 isoform X1

      See identical proteins and their annotated locations for XP_005635923.1

      Conserved Domains (3) summary
      cd00200
      Location:332621
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:343380
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
    2. XM_845571.5XP_850664.1  autophagy-related protein 16-1 isoform X2

      UniProtKB/TrEMBL
      E2R5F8
      Related
      ENSCAFP00000017342.3, ENSCAFT00000018720.3
      Conserved Domains (3) summary
      cd00200
      Location:316605
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:327364
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
    3. XM_534608.6XP_534608.2  autophagy-related protein 16-1 isoform X3

      Conserved Domains (3) summary
      cd00200
      Location:297586
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:308345
      7WD40; WD40 repeat [structural motif]
      pfam08614
      Location:31206
      ATG16; Autophagy protein 16 (ATG16)
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