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    KDM4B lysine demethylase 4B [ Canis lupus familiaris (dog) ]

    Gene ID: 476741, updated on 26-Sep-2018

    Summary

    Official Symbol
    KDM4Bprovided by VGNC
    Official Full Name
    lysine demethylase 4Bprovided by VGNC
    Primary source
    VGNC:VGNC:42325
    See related
    Ensembl:ENSCAFG00000018925
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    JMJD2B
    Orthologs

    Genomic context

    See KDM4B in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) 20 NC_006602.3 (54713900..54843991, complement)

    Chromosome 20 - NC_006602.3Genomic Context describing neighboring genes Neighboring gene zinc and ring finger 4 Neighboring gene protein tyrosine phosphatase, receptor type S Neighboring gene uncharacterized LOC111091396 Neighboring gene ubiquitin like with PHD and ring finger domains 1 Neighboring gene arrestin domain containing 5

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006602.3 Chromosome 20 Reference CanFam3.1 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    lysine-specific demethylase 4B
    Names
    jumonji domain containing 2B

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006602.3 Reference CanFam3.1 Primary Assembly

      Range
      54713900..54843991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022407187.1XP_022262895.1  lysine-specific demethylase 4B isoform X1

      Conserved Domains (4) summary
      smart00333
      Location:9961046
      TUDOR; Tudor domain
      pfam02373
      Location:223339
      JmjC; JmjC domain, hydroxylase
      cd15576
      Location:758863
      PHD_JMJD2B; PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
      cd15714
      Location:872981
      ePHD_JMJD2B; Extended PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
    2. XM_005633015.1XP_005633072.1  lysine-specific demethylase 4B isoform X4

      Conserved Domains (5) summary
      smart00545
      Location:1556
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00333
      Location:915965
      TUDOR; Tudor domain
      pfam02373
      Location:176292
      JmjC; JmjC domain, hydroxylase
      cd15576
      Location:677782
      PHD_JMJD2B; PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
      cd15714
      Location:791900
      ePHD_JMJD2B; Extended PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
    3. XM_014122127.1XP_013977602.1  lysine-specific demethylase 4B isoform X3

      Related
      ENSCAFP00000027917.3, ENSCAFT00000030040.3
      Conserved Domains (5) summary
      smart00545
      Location:1556
      JmjN; Small domain found in the jumonji family of transcription factors
      smart00333
      Location:949999
      TUDOR; Tudor domain
      pfam02373
      Location:176292
      JmjC; JmjC domain, hydroxylase
      cd15576
      Location:711816
      PHD_JMJD2B; PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
      cd15714
      Location:825934
      ePHD_JMJD2B; Extended PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
    4. XM_022407188.1XP_022262896.1  lysine-specific demethylase 4B isoform X2

      Conserved Domains (3) summary
      pfam02373
      Location:223339
      JmjC; JmjC domain, hydroxylase
      cd15576
      Location:758863
      PHD_JMJD2B; PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
      cl22851
      Location:872925
      PHD_SF; PHD finger superfamily
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