Format

Send to:

Choose Destination
    • Showing Current items.

    AGGF1 angiogenic factor with G-patch and FHA domains 1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 471508, updated on 23-Mar-2018

    Summary

    Official Symbol
    AGGF1provided by VGNC
    Official Full Name
    angiogenic factor with G-patch and FHA domains 1provided by VGNC
    Primary source
    VGNC:VGNC:3898
    See related
    Ensembl:ENSPTRG00000017008
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See AGGF1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 5 NC_036884.1 (37768769..37801259, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 5 NC_006472.3 (38398059..38509036, complement)

    Chromosome 5 - NC_036884.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107974697 Neighboring gene small nucleolar RNA SNORA47 Neighboring gene zinc finger BED-type containing 3 Neighboring gene corticotropin releasing hormone binding protein Neighboring gene U6atac minor spliceosomal RNA

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    angiogenic factor with G patch and FHA domains 1
    Names
    angiogenic factor VG5Q

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036884.1 Reference Clint_PTRv2 Primary Assembly

      Range
      37768769..37801259 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_526886.6XP_526886.1  angiogenic factor with G patch and FHA domains 1 isoform X1

      See identical proteins and their annotated locations for XP_526886.1

      UniProtKB/TrEMBL
      H2QR44
      Related
      ENSPTRP00000029122.4
      Conserved Domains (4) summary
      cd00060
      Location:410516
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd16164
      Location:200253
      OCRE_VG5Q; OCRE domain found in angiogenic factor VG5Q and similar proteins
      pfam01585
      Location:620661
      G-patch; G-patch domain
      pfam05335
      Location:2979
      DUF745; Protein of unknown function (DUF745)
    2. XM_016953113.2XP_016808602.1  angiogenic factor with G patch and FHA domains 1 isoform X2

    Support Center