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    YBX3 Y-box binding protein 3 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 465289, updated on 3-Apr-2018

    Summary

    Official Symbol
    YBX3provided by VGNC
    Official Full Name
    Y-box binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:5653
    See related
    Ensembl:ENSPTRG00000004681
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Also known as
    CSDA
    Orthologs

    Genomic context

    See YBX3 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 12 NC_036891.1 (10908544..10932912, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 12 NC_006479.3 (10915862..10940146, complement)

    Chromosome 12 - NC_036891.1Genomic Context describing neighboring genes Neighboring gene mago homolog B, exon junction complex subunit Neighboring gene serine/threonine/tyrosine kinase 1 Neighboring gene uncharacterized LOC107967458 Neighboring gene uncharacterized LOC104001470 Neighboring gene 10 kDa heat shock protein, mitochondrial pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Pathways from BioSystems

    • Tight junction, organism-specific biosystem (from KEGG)
      Tight junction, organism-specific biosystemTight junctions (TJs) are essential for establishing a selectively permeable barrier to diffusion through the paracellular space between neighboring cells. TJs are composed of at least three types of...
    • Tight junction, conserved biosystem (from KEGG)
      Tight junction, conserved biosystemTight junctions (TJs) are essential for establishing a selectively permeable barrier to diffusion through the paracellular space between neighboring cells. TJs are composed of at least three types of...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    Y-box-binding protein 3
    Names
    DNA-binding protein A
    cold shock domain protein A

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001280274.1NP_001267203.1  Y-box-binding protein 3

      See identical proteins and their annotated locations for NP_001267203.1

      Status: PROVISIONAL

      Source sequence(s)
      AK305220
      UniProtKB/TrEMBL
      G2HEQ6
      Related
      ENSPTRP00000008009.4, ENSPTRT00000008667.4
      Conserved Domains (1) summary
      pfam00313
      Location:93162
      CSD; 'Cold-shock' DNA-binding domain

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036891.1 Reference Clint_PTRv2 Primary Assembly

      Range
      10908544..10932912 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009424783.3XP_009423058.2  Y-box-binding protein 3 isoform X1

      Conserved Domains (1) summary
      pfam00313
      Location:92161
      CSD; 'Cold-shock' DNA-binding domain
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