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    EGR3 early growth response 3 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 464048, updated on 23-Mar-2018

    Summary

    Official Symbol
    EGR3provided by VGNC
    Official Full Name
    early growth response 3provided by VGNC
    Primary source
    VGNC:VGNC:11966
    See related
    Ensembl:ENSPTRG00000020067
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See EGR3 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 8 NC_036887.1 (22542026..22549457, complement)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 8 NC_006475.3 (18887656..18893203, complement)

    Chromosome 8 - NC_036887.1Genomic Context describing neighboring genes Neighboring gene cell cycle and apoptosis regulator 2 Neighboring gene bridging integrator 3 Neighboring gene uncharacterized LOC107976261 Neighboring gene phosphatidylethanolamine binding protein 4 Neighboring gene TNF receptor superfamily member 10b Neighboring gene Rho related BTB domain containing 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific RNA-sequencing for ten non-human primate species
    • Description: Total RNA sequencing of fifteen different tissues for ten non-human primates
    • BioProject: PRJNA271912
    • Publication: PMID 25392405
    • Analysis date: Tue Apr 3 07:13:10 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Hepatitis B, organism-specific biosystem (from KEGG)
      Hepatitis B, organism-specific biosystemHepatitis B virus (HBV) is an enveloped virus and contains a partially double-stranded relaxed circular DNA (RC-DNA) genome. After entry into hepatocytes, HBV RC-DNA is transported to the nucleus and...
    • Viral carcinogenesis, organism-specific biosystem (from KEGG)
      Viral carcinogenesis, organism-specific biosystemThere is a strong association between viruses and the development of human malignancies. We now know that at least six human viruses, Epstein-Barr virus (EBV), hepatitis B virus (HBV), hepatitis C vi...
    • Viral carcinogenesis, conserved biosystem (from KEGG)
      Viral carcinogenesis, conserved biosystemThere is a strong association between viruses and the development of human malignancies. We now know that at least six human viruses, Epstein-Barr virus (EBV), hepatitis B virus (HBV), hepatitis C vi...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    early growth response protein 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036887.1 Reference Clint_PTRv2 Primary Assembly

      Range
      22542026..22549457 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001157715.6XP_001157715.1  early growth response protein 3 isoform X2

      See identical proteins and their annotated locations for XP_001157715.1

      UniProtKB/TrEMBL
      H2QVV4
      Related
      ENSPTRP00000034368.3
      Conserved Domains (5) summary
      COG5048
      Location:303359
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:277299
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:275299
      zf-C2H2; Zinc finger, C2H2 type
      pfam11928
      Location:87147
      DUF3446; Domain of unknown function (DUF3446)
      pfam13465
      Location:319344
      zf-H2C2_2; Zinc-finger double domain
    2. XM_519651.5XP_519651.2  early growth response protein 3 isoform X3

      See identical proteins and their annotated locations for XP_519651.2

      Related
      ENSPTRP00000070882.1, ENSPTRT00000105456.1
      Conserved Domains (3) summary
      COG5048
      Location:265338
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:239261
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam11928
      Location:49109
      DUF3446; Domain of unknown function (DUF3446)
    3. XM_003311640.2XP_003311688.1  early growth response protein 3 isoform X4

      See identical proteins and their annotated locations for XP_003311688.1

      Conserved Domains (4) summary
      COG5048
      Location:249305
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:223245
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:221245
      zf-C2H2; Zinc finger, C2H2 type
      pfam11928
      Location:3393
      DUF3446; Domain of unknown function (DUF3446)
    4. XM_009454999.3XP_009453274.1  early growth response protein 3 isoform X1

      See identical proteins and their annotated locations for XP_009453274.1

      Conserved Domains (5) summary
      COG5048
      Location:358431
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:332354
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:330354
      zf-C2H2; Zinc finger, C2H2 type
      pfam11928
      Location:142202
      DUF3446; Domain of unknown function (DUF3446)
      pfam13465
      Location:374399
      zf-H2C2_2; Zinc-finger double domain
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