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    LOC4349446 eukaryotic translation initiation factor 3 subunit B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349446, updated on 4-Feb-2018
    Gene symbol
    LOC4349446
    Gene description
    eukaryotic translation initiation factor 3 subunit B
    Locus tag
    OSNPB_100569200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 107.8), flowers (RPKM 78.6) and 6 other tissues See more
    See LOC4349446 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    101 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22563365..22567797, complement)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4349444 Neighboring gene phosphatidylinositol N-acetylglucosaminyltransferase subunit P Neighboring gene probable methyltransferase PMT2 Neighboring gene EMI domain-containing protein 1

    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    • RNA transport, organism-specific biosystem (from KEGG)
      RNA transport, organism-specific biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
    • RNA transport, conserved biosystem (from KEGG)
      RNA transport, conserved biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...

    Homology

    Gene Ontology Provided by Gramene

    Function Evidence Code Pubs
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    eukaryotic translation initiation factor 3 subunit B
    Names
    Os10g0569200

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22563365..22567797 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758645.1XP_015614131.1  eukaryotic translation initiation factor 3 subunit B

      UniProtKB/TrEMBL
      Q8S7Q0
      Conserved Domains (4) summary
      cd12278
      Location:67144
      RRM_eIF3B; RNA recognition motif in eukaryotic translation initiation factor 3 subunit B (eIF-3B) and similar proteins
      pfam08662
      Location:407607
      eIF2A; Eukaryotic translation initiation factor eIF2A
      sd00039
      Location:218252
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:220322
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
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