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    vret vreteno [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42695, updated on 2-Nov-2024

    Summary

    Official Symbol
    vretprovided by FlyBase
    Official Full Name
    vretenoprovided by FlyBase
    Primary source
    FLYBASE:FBgn0263143
    Locus tag
    Dmel_CG4771
    See related
    AllianceGenome:FB:FBgn0263143
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG4771; Dmel\CG4771; Vret
    Summary
    Involved in oogenesis; primary piRNA processing; and secondary piRNA processing. Located in P granule and cytosol. Is active in Yb body. Is expressed in organism; ovary; and testis. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See vret in Genome Data Viewer
    Location:
    94C4-94C4; 3-76 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (22742954..22745581, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (18568676..18571303, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Tak1-like 2 Neighboring gene Dicer-1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Heterochromatin Protein 1c Neighboring gene uncharacterized protein Neighboring gene rumi

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in P granule organization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in oogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in piRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in primary piRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in primary piRNA processing IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    involved_in secondary piRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in spermatogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in P granule IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in P granule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in Yb body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in Yb body IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    vreteno
    Names
    CG4771-PA
    avocado
    vret-PA
    vretano

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      22742954..22745581 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142835.4NP_651092.1  vreteno [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651092.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VCU7
      Related
      FBpp0083716
      Conserved Domains (2) summary
      cd04508
      Location:577622
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      pfam00567
      Location:520640
      TUDOR; Tudor domain