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    TRIM59 tripartite motif containing 59 [ Gallus gallus (chicken) ]

    Gene ID: 425013, updated on 23-May-2018
    Symbol
    TRIM59provided by CGNC
    Full Name
    tripartite motif containing 59provided by CGNC
    Primary source
    CGNC:52316
    See related
    Ensembl:ENSGALG00000023571
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    See TRIM59 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 9 NC_006096.5 (22298386..22311591)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 9 NC_006096.4 (22240453..22247777)

    Chromosome 9 - NC_006096.5Genomic Context describing neighboring genes Neighboring gene karyopherin subunit alpha 4 Neighboring gene small Cajal body-specific RNA 7 Neighboring gene microRNA 1692 Neighboring gene structural maintenance of chromosomes 4 Neighboring gene microRNA 16-2 Neighboring gene microRNA 15b

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    intraciliary transport particle B IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Preferred Names
    tripartite motif-containing protein 59

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001031320.1NP_001026491.1  tripartite motif-containing protein 59

      See identical proteins and their annotated locations for NP_001026491.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ719450
      UniProtKB/Swiss-Prot
      Q5ZMD4
      Related
      ENSGALP00000038403.1, ENSGALT00000039192.1
      Conserved Domains (4) summary
      cd00162
      Location:963
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam00643
      Location:92134
      zf-B_box; B-box zinc finger
      cd16269
      Location:235246
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:138266
      GBP_C; Guanylate-binding protein, C-terminal domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006096.5 Reference GRCg6a Primary Assembly

      Range
      22298386..22311591
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015291678.2XP_015147164.1  tripartite motif-containing protein 59 isoform X1

      UniProtKB/TrEMBL
      F1NKY5
      Conserved Domains (3) summary
      cd00162
      Location:963
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam00643
      Location:92134
      zf-B_box; B-box zinc finger
      cl23765
      Location:142268
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
    2. XM_025153382.1XP_025009150.1  tripartite motif-containing protein 59 isoform X1

    3. XM_015291676.2XP_015147162.1  tripartite motif-containing protein 59 isoform X1

      UniProtKB/TrEMBL
      F1NKY5
      Conserved Domains (3) summary
      cd00162
      Location:963
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam00643
      Location:92134
      zf-B_box; B-box zinc finger
      cl23765
      Location:142268
      iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
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