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    EPYC epiphycan [ Gallus gallus (chicken) ]

    Gene ID: 417890, updated on 20-Jun-2018
    Symbol
    EPYCprovided by CGNC
    Full Name
    epiphycanprovided by CGNC
    Primary source
    CGNC:50613
    See related
    Ensembl:ENSGALG00000011269
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    DSPG3
    Orthologs
    See EPYC in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 1 NC_006088.5 (43956043..43978617, complement)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 1 NC_006088.4 (43925158..43947733, complement)

    Chromosome 1 - NC_006088.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053007 Neighboring gene uncharacterized LOC107053006 Neighboring gene uncharacterized LOC112533355 Neighboring gene keratocan Neighboring gene lumican

    Homology

    Preferred Names
    epiphycan
    Names
    PG-Lb
    dermatan sulfate proteoglycan 3
    proteoglycan core protein
    proteoglycan-Lb
    small chondroitin/dermatan sulfate proteoglycan

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004382.2NP_001004382.1  epiphycan precursor

      See identical proteins and their annotated locations for NP_001004382.1

      Status: PROVISIONAL

      Source sequence(s)
      D10485
      UniProtKB/Swiss-Prot
      Q90944
      Related
      ENSGALP00000018368.2, ENSGALT00000018390.2
      Conserved Domains (4) summary
      smart00013
      Location:115139
      LRRNT; Leucine rich repeat N-terminal domain
      cd00116
      Location:162264
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:139162
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:162243
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006088.5 Reference GRCg6a Primary Assembly

      Range
      43956043..43978617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025148153.1XP_025003921.1  epiphycan isoform X1

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