Format

Send to:

Choose Destination
    • Showing Current items.

    zgc:56596 zgc:56596 [ Danio rerio (zebrafish) ]

    Gene ID: 393270, updated on 1-Aug-2018

    Summary

    Official Symbol
    zgc:56596provided by ZNC
    Official Full Name
    zgc:56596provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1089
    See related
    Ensembl:ENSDARG00000007359 Vega:OTTDARG00000027016
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    ubl4a
    Orthologs

    Genomic context

    See zgc:56596 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (50953776..50962865)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (50964754..50973843)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene protein kinase cGMP-dependent 1, like Neighboring gene si:dkey-32e23.4 Neighboring gene beta-2-microglobulin, like Neighboring gene RAB7b, member RAS oncogene family Neighboring gene si:dkey-32e23.6

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Clone Names

    • MGC56596

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    tail-anchored membrane protein insertion into ER membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    BAT3 complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200300.1NP_956594.1  ubiquitin-like protein 4A

      See identical proteins and their annotated locations for NP_956594.1

      Status: PROVISIONAL

      Source sequence(s)
      BC049498
      UniProtKB/Swiss-Prot
      Q7ZWB2
      Related
      ENSDARP00000009190.5, OTTDARP00000028994, ENSDART00000013870.6, OTTDART00000036133
      Conserved Domains (2) summary
      cd01807
      Location:174
      GDX_N; ubiquitin-like domain of GDX
      smart00213
      Location:172
      UBQ; Ubiquitin homologues

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      50953776..50962865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center