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    calcoco1b calcium binding and coiled-coil domain 1b [ Danio rerio (zebrafish) ]

    Gene ID: 386968, updated on 1-Aug-2018

    Summary

    Official Symbol
    calcoco1bprovided by ZNC
    Official Full Name
    calcium binding and coiled-coil domain 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-031118-126
    See related
    Ensembl:ENSDARG00000016391 Vega:OTTDARG00000043230
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    tceb3; zgc:56638; wu:fw66g10

    Genomic context

    See calcoco1b in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (2111582..2131458, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (2166340..2186038, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 1, group D, member 4b Neighboring gene retinoic acid receptor, gamma b Neighboring gene uncharacterized LOC100534851 Neighboring gene homeobox C13b

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    translation elongation factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    translation IEA
    Inferred from Electronic Annotation
    more info
     
    translational elongation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    transcription elongation factor B (SIII), polypeptide 3
    Names
    elongin A
    transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200121.2NP_956415.2  transcription elongation factor B (SIII), polypeptide 3

      Status: VALIDATED

      Source sequence(s)
      CABZ01088247, CABZ01088248
      UniProtKB/TrEMBL
      F1RBA9
      Related
      ENSDARP00000005521.7, OTTDARP00000048949, ENSDART00000008409.10, OTTDART00000062608

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      2111582..2131458 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479558.1XP_021335233.1  transcription elongation factor B (SIII), polypeptide 3 isoform X2

      Conserved Domains (1) summary
      pfam07888
      Location:5527
      CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
    2. XM_017358207.2XP_017213696.1  transcription elongation factor B (SIII), polypeptide 3 isoform X1

      UniProtKB/TrEMBL
      A0A0R4IHV0
      Conserved Domains (3) summary
      pfam07888
      Location:5534
      CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
      pfam15960
      Location:281394
      DUF4763; Domain of unknown function (DUF4763)
      cl19511
      Location:153306
      DUF2317; Uncharacterized protein conserved in bacteria (DUF2317)
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