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    SDK1 sidekick cell adhesion molecule 1 [ Gallus gallus (chicken) ]

    Gene ID: 373894, updated on 9-Sep-2018

    Summary

    Official Symbol
    SDK1provided by CGNC
    Official Full Name
    sidekick cell adhesion molecule 1provided by CGNC
    Primary source
    CGNC:48946
    See related
    Ensembl:ENSGALG00000004420
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs

    Genomic context

    See SDK1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    48
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 14 NC_006101.5 (3924572..4284909)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 14 NC_006101.4 (3529579..3889916)

    Chromosome 14 - NC_006101.5Genomic Context describing neighboring genes Neighboring gene G protein subunit alpha 12 Neighboring gene caspase recruitment domain family member 11 Neighboring gene cytochrome P450 family 3 subfamily A member 4 Neighboring gene cytochrome P450 family 3 subfamily A member 5

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    identical protein binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    homophilic cell adhesion via plasma membrane adhesion molecules IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    homophilic cell adhesion via plasma membrane adhesion molecules IDA
    Inferred from Direct Assay
    more info
    PubMed 
    retina layer formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    retina layer formation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synapse assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    synapse assembly IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    synapse IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    protein sidekick-1
    Names
    sidekick 1
    sidekick homolog 1, cell adhesion molecule

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204105.4NP_989436.2  protein sidekick-1

      Status: VALIDATED

      Source sequence(s)
      AADN05000376
      UniProtKB/TrEMBL
      A0A1L1RPH5
      Related
      ENSGALP00000060681.1, ENSGALT00000083692.1
      Conserved Domains (6) summary
      smart00408
      Location:176234
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:259335
      IG_like; Immunoglobulin like
      cd00063
      Location:17621855
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:538628
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:13371423
      fn3; Fibronectin type III domain
      cl11960
      Location:552628
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006101.5 Reference GRCg6a Primary Assembly

      Range
      3924572..4284909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015294102.2XP_015149588.1  protein sidekick-1 isoform X1

      UniProtKB/TrEMBL
      A0A1L1RPH5
      Conserved Domains (6) summary
      smart00408
      Location:176234
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:259335
      IG_like; Immunoglobulin like
      cd00063
      Location:17621855
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:538628
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:13371423
      fn3; Fibronectin type III domain
      cl11960
      Location:552628
      Ig; Immunoglobulin domain
    2. XM_015294103.2XP_015149589.1  protein sidekick-1 isoform X1

      UniProtKB/TrEMBL
      A0A1L1RPH5
      Conserved Domains (6) summary
      smart00408
      Location:176234
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:259335
      IG_like; Immunoglobulin like
      cd00063
      Location:17621855
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:538628
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:13371423
      fn3; Fibronectin type III domain
      cl11960
      Location:552628
      Ig; Immunoglobulin domain
    3. XM_015294104.2XP_015149590.1  protein sidekick-1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5P2R1
      Related
      ENSGALP00000046959.1
      Conserved Domains (6) summary
      smart00408
      Location:176234
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:259335
      IG_like; Immunoglobulin like
      cd00063
      Location:17421835
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:538628
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:13371423
      fn3; Fibronectin type III domain
      cl11960
      Location:552628
      Ig; Immunoglobulin domain
    4. XM_015294105.2XP_015149591.1  protein sidekick-1 isoform X3

      Conserved Domains (4) summary
      cd00063
      Location:13771470
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:153243
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:9521038
      fn3; Fibronectin type III domain
      cl11960
      Location:167243
      Ig; Immunoglobulin domain
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