Format

Send to:

Choose Destination
    • Showing Current items.

    Calr3 calreticulin 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 364529, updated on 3-Apr-2018
    Official Symbol
    Calr3provided by RGD
    Official Full Name
    calreticulin 3provided by RGD
    Primary source
    RGD:1309243
    See related
    Ensembl:ENSRNOG00000013260
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Testes (RPKM 367.3), Kidney (RPKM 35.7) and 6 other tissues See more
    Orthologs
    Location:
    16p14
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (19097391..19124062)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 16 NC_005115.3 (18960142..18985150)

    Chromosome 16 - NC_005115.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103693914 Neighboring gene calcium homeostasis endoplasmic reticulum protein Neighboring gene similar to 1700030K09Rik protein Neighboring gene epidermal growth factor receptor pathway substrate 15-like 1 Neighboring gene Kruppel-like factor 2

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    NOT calcium ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding involved in protein folding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding involved in protein folding ISO
    Inferred from Sequence Orthology
    more info
     
    unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    protein folding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum lumen IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum lumen ISO
    Inferred from Sequence Orthology
    more info
     
    nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear envelope ISO
    Inferred from Sequence Orthology
    more info
     

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012212.1NP_001012212.1  calreticulin-3 precursor

      See identical proteins and their annotated locations for NP_001012212.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079049
      UniProtKB/TrEMBL
      Q6AYG8
      Related
      ENSRNOP00000018018.4, ENSRNOT00000018018.5
      Conserved Domains (1) summary
      pfam00262
      Location:23315
      Calreticulin; Calreticulin family

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005115.4 Reference Rnor_6.0 Primary Assembly

      Range
      19097391..19124062
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000084.1 Alternate Rn_Celera

      Range
      17615842..17640280
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center