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    Kirrel3 kirre like nephrin family adhesion molecule 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315546, updated on 21-Jul-2018

    Summary

    Official Symbol
    Kirrel3provided by RGD
    Official Full Name
    kirre like nephrin family adhesion molecule 3provided by RGD
    Primary source
    RGD:1311382
    See related
    Ensembl:ENSRNOG00000009772
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Brain (RPKM 107.6), Testes (RPKM 16.9) and 4 other tissues See more
    Orthologs

    Genomic context

    See Kirrel3 in Genome Data Viewer
    Location:
    8q21
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (35692525..36254755)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 8 NC_005107.3 (35722596..36273792)

    Chromosome 8 - NC_005107.4Genomic Context describing neighboring genes Neighboring gene ubiquitin and ribosomal protein L40-like Neighboring gene uncharacterized LOC108351842 Neighboring gene uncharacterized LOC103693038 Neighboring gene uncharacterized LOC102555390 Neighboring gene uncharacterized LOC108351671 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene decapping enzyme, scavenger

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    glomerulus morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    glomerulus morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    hemopoiesis IEA
    Inferred from Electronic Annotation
    more info
     
    hemopoiesis ISO
    Inferred from Sequence Orthology
    more info
     
    hippocampus development IEA
    Inferred from Electronic Annotation
    more info
     
    hippocampus development ISO
    Inferred from Sequence Orthology
    more info
     
    homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
     
    homophilic cell adhesion via plasma membrane adhesion molecules ISO
    Inferred from Sequence Orthology
    more info
     
    inter-male aggressive behavior IEA
    Inferred from Electronic Annotation
    more info
     
    inter-male aggressive behavior ISO
    Inferred from Sequence Orthology
    more info
     
    neuron migration IEA
    Inferred from Electronic Annotation
    more info
     
    neuron migration ISO
    Inferred from Sequence Orthology
    more info
     
    neuron projection morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    neuron projection morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    principal sensory nucleus of trigeminal nerve development IEA
    Inferred from Electronic Annotation
    more info
     
    principal sensory nucleus of trigeminal nerve development ISO
    Inferred from Sequence Orthology
    more info
     
    synapse assembly IEA
    Inferred from Electronic Annotation
    more info
     
    synapse assembly ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    axon IEA
    Inferred from Electronic Annotation
    more info
     
    axon ISO
    Inferred from Sequence Orthology
    more info
     
    dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    dendritic shaft IEA
    Inferred from Electronic Annotation
    more info
     
    dendritic shaft ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular region ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    kin of IRRE-like protein 3
    Names
    kin of IRRE like 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001048215.1NP_001041680.1  kin of IRRE-like protein 3 precursor

      See identical proteins and their annotated locations for NP_001041680.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ902828
      UniProtKB/TrEMBL
      Q09GS6
      Related
      ENSRNOP00000013036.6, ENSRNOT00000013036.6
      Conserved Domains (7) summary
      cd05759
      Location:165246
      Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
      cd05898
      Location:418515
      Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
      smart00408
      Location:349400
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:426515
      IG_like; Immunoglobulin like
      pfam07679
      Location:335416
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:254318
      Ig_3; Immunoglobulin domain
      cl11960
      Location:52143
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005107.4 Reference Rnor_6.0 Primary Assembly

      Range
      35692525..36254755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017595617.1XP_017451106.1  kin of IRRE-like protein 3 isoform X2

    2. XM_017595616.1XP_017451105.1  kin of IRRE-like protein 3 isoform X1

    Alternate Rn_Celera

    Genomic

    1. AC_000076.1 Alternate Rn_Celera

      Range
      34284951..34824973
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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