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    Atl3 atlastin GTPase 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309187, updated on 13-Aug-2019

    Summary

    Official Symbol
    Atl3provided by RGD
    Official Full Name
    atlastin GTPase 3provided by RGD
    Primary source
    RGD:1309871
    See related
    Ensembl:ENSRNOG00000021203
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309871
    Expression
    Biased expression in Liver (RPKM 394.9), Adrenal (RPKM 355.6) and 9 other tissues See more
    Orthologs

    Genomic context

    See Atl3 in Genome Data Viewer
    Location:
    1q43
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (222746023..222788439)
    106 current Rn_Celera (GCF_000002265.2) 1 AC_000069.1 (202213164..202254102)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (229732744..229775614)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene similar to RIKEN cDNA 2700081O15 Neighboring gene reticulon 3 Neighboring gene uncharacterized LOC102551693 Neighboring gene similar to cell division cycle associated 5 Neighboring gene similar to Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    GTPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    identical protein binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    NOT ER to Golgi vesicle-mediated transport ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Golgi organization IEA
    Inferred from Electronic Annotation
    more info
     
    Golgi organization ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Golgi organization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    endoplasmic reticulum organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    endoplasmic reticulum organization IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum organization ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    endoplasmic reticulum organization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    positive regulation of endoplasmic reticulum tubular network organization IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of endoplasmic reticulum tubular network organization ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    positive regulation of endoplasmic reticulum tubular network organization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein homooligomerization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
     
    protein homooligomerization ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    protein homooligomerization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    endoplasmic reticulum ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum tubular network ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    endoplasmic reticulum tubular network ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    endoplasmic reticulum tubular network membrane IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum tubular network membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    endoplasmic reticulum tubular network membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    exocytic vesicle ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    integral component of membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044241.1NP_001037706.1  atlastin-3

      See identical proteins and their annotated locations for NP_001037706.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ450893
      UniProtKB/Swiss-Prot
      Q0ZHH6
      UniProtKB/TrEMBL
      A0A0G2JSS9
      Related
      ENSRNOP00000028787.5, ENSRNOT00000028787.8
      Conserved Domains (1) summary
      cl21455
      Location:32300
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      222746023..222788439
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017589257.1XP_017444746.1  atlastin-3 isoform X2

    2. XM_006230812.3XP_006230874.1  atlastin-3 isoform X1

      Conserved Domains (1) summary
      cl21455
      Location:37305
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      202213164..202254102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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