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    nr6a1a nuclear receptor subfamily 6, group A, member 1a [ Danio rerio (zebrafish) ]

    Gene ID: 30506, updated on 2-Oct-2018

    Summary

    Official Symbol
    nr6a1aprovided by ZNC
    Official Full Name
    nuclear receptor subfamily 6, group A, member 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-991207-19
    See related
    Ensembl:ENSDARG00000101508 Vega:OTTDARG00000032655
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    gcnf; nr6a1; zfGCNF

    Genomic context

    See nr6a1a in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (52882817..53044089, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (52901515..53165510, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor D2 Neighboring gene nuclear receptor subfamily 5, group A, member 1a Neighboring gene uncharacterized LOC110440026 Neighboring gene microRNA 181a-2 Neighboring gene microRNA 181b-2 Neighboring gene NAD kinase a Neighboring gene WD repeat domain 46

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    RNA polymerase II proximal promoter sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    steroid hormone receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    anterior/posterior pattern specification ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cell migration ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    midbrain-hindbrain boundary development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    neurogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    transcription factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    nuclear receptor subfamily 6 group A member 1-A
    Names
    GCNF-A
    germ cell nuclear factor A

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_131256.2NP_571331.2  nuclear receptor subfamily 6 group A member 1-A

      See identical proteins and their annotated locations for NP_571331.2

      Status: PROVISIONAL

      Source sequence(s)
      AJ007703
      UniProtKB/Swiss-Prot
      Q9PU65
      Related
      ENSDARP00000150789.1, ENSDART00000191653.1
      Conserved Domains (2) summary
      cd06953
      Location:237449
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:36124
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      52882817..53044089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017357271.2XP_017212760.1  nuclear receptor subfamily 6 group A member 1-A isoform X1

      UniProtKB/TrEMBL
      B3DH62
      Related
      ENSDARP00000130860.1, ENSDART00000168185.2
      Conserved Domains (2) summary
      cd06953
      Location:208420
      NR_LBD_DHR4_like; The ligand binding domain of orphan nuclear receptor Ecdysone-induced receptor DHR4
      cd07169
      Location:695
      NR_DBD_GCNF_like; DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers
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