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    Wdr88 WD repeat domain 88 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 292809, updated on 13-Aug-2019

    Summary

    Official Symbol
    Wdr88provided by RGD
    Official Full Name
    WD repeat domain 88provided by RGD
    Primary source
    RGD:1560122
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560122
    Expression
    Restricted expression toward (RPKM 51.9) See more
    Orthologs

    Genomic context

    See Wdr88 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (91487807..91528318, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (92618095..92658146, complement)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 member 10 Neighboring gene LDL receptor related protein 3 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene G patch domain containing 1 Neighboring gene similar to small nuclear ribonucleoprotein polypeptide G

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    WD repeat-containing protein 88

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      91487807..91528318 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006228899.2XP_006228961.2  WD repeat-containing protein 88 isoform X1

      Conserved Domains (5) summary
      smart00283
      Location:48274
      MA; Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)
      COG2319
      Location:458903
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:591888
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:602640
      7WD40; WD40 repeat [structural motif]
      cl23763
      Location:33134
      MCP_signal; Methyl-accepting chemotaxis protein (MCP), signaling domain

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      82234739..82274610 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006223200.2XP_006223262.1  WD repeat-containing protein 88 isoform X2

      Conserved Domains (3) summary
      COG2319
      Location:121566
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:254551
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:265303
      7WD40; WD40 repeat [structural motif]
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