Format

Send to:

Choose Destination
    • Showing Current items.

    POU5F1 POU class 5 homeobox 1 [ Bos taurus (cattle) ]

    Gene ID: 282316, updated on 7-Oct-2018

    Summary

    Gene symbol
    POU5F1
    Gene description
    POU class 5 homeobox 1
    See related
    BGD:BT12336; Ensembl:ENSBTAG00000021111
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    OCT3; OCT4; OTF-3; oct-3; oct-4
    Orthologs

    Genomic context

    See POU5F1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 23 NC_037350.1 (27982798..27987297)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 23 AC_000180.1 (27769893..27774392)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene non-classical MHC class I antigen Neighboring gene MHC class I polypeptide-related sequence B-like Neighboring gene transcription factor 19 Neighboring gene coiled-coil alpha-helical rod protein 1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    POU domain, class 5, transcription factor 1
    Names
    Octamer-binding transcription factor 3
    octamer transcription factor 4
    octamer-binding protein 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_174580.3NP_777005.2  POU domain, class 5, transcription factor 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000023
      UniProtKB/TrEMBL
      F1N017
      Related
      ENSBTAP00000028122.5, ENSBTAT00000028122.5
      Conserved Domains (2) summary
      smart00352
      Location:138212
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:233286
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      27982798..27987297
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center