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    Ubfd1 ubiquitin family domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 28018, updated on 19-May-2018
    Official Symbol
    Ubfd1provided by MGI
    Official Full Name
    ubiquitin family domain containing 1provided by MGI
    Primary source
    MGI:MGI:107301
    See related
    Ensembl:ENSMUSG00000030870 Vega:OTTMUSG00000025468
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ubph; AI467302; D7Wsu105e; D7Wsu128e
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 24.0), CNS E18 (RPKM 23.9) and 28 other tissues See more
    Orthologs
    See Ubfd1 in Genome Data Viewer
    Location:
    7 F2; 7 65.35 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (122067183..122082199)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (129210712..129225713)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene golgi associated, gamma adaptin ear containing, ARF binding protein 2 Neighboring gene glutamyl-tRNA synthetase 2, mitochondrial Neighboring gene NADH:ubiquinone oxidoreductase subunit AB1 Neighboring gene partner and localizer of BRCA2 Neighboring gene predicted gene 16326

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Preferred Names
    ubiquitin domain-containing protein UBFD1
    Names
    ubiquitin-binding protein homolog

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138589.2NP_613055.2  ubiquitin domain-containing protein UBFD1

      See identical proteins and their annotated locations for NP_613055.2

      Status: PROVISIONAL

      Source sequence(s)
      AC124379, AK077395
      Consensus CDS
      CCDS21808.1
      UniProtKB/Swiss-Prot
      Q78JW9
      Related
      ENSMUSP00000033158.4, OTTMUSP00000030961, ENSMUST00000033158.5, OTTMUST00000062699
      Conserved Domains (1) summary
      pfam00240
      Location:151215
      ubiquitin; Ubiquitin family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      122067183..122082199
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006507914.3XP_006507977.3  ubiquitin domain-containing protein UBFD1 isoform X2

    2. XM_006507913.3XP_006507976.3  ubiquitin domain-containing protein UBFD1 isoform X1

    3. XM_006507915.3XP_006507978.3  ubiquitin domain-containing protein UBFD1 isoform X3

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