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    R3HCC1L R3H domain and coiled-coil containing 1 like [ Homo sapiens (human) ]

    Gene ID: 27291, updated on 4-Jul-2021

    Summary

    Official Symbol
    R3HCC1Lprovided by HGNC
    Official Full Name
    R3H domain and coiled-coil containing 1 likeprovided by HGNC
    Primary source
    HGNC:HGNC:23512
    See related
    Ensembl:ENSG00000166024
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PSORT; GIDRP86; GIDRP88; C10orf28
    Expression
    Broad expression in testis (RPKM 8.9), bone marrow (RPKM 4.0) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See R3HCC1L in Genome Data Viewer
    Location:
    10q24.2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    109.20210514 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (98134630..98244897)
    105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (99894414..100004654)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 340 Neighboring gene cartilage acidic protein 1 Neighboring gene microRNA 3085 Neighboring gene lysyl oxidase like 4 Neighboring gene Sharpr-MPRA regulatory region 15191 Neighboring gene uncharacterized LOC105378449

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ25458, FLJ37160

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 

    General protein information

    Preferred Names
    coiled-coil domain-containing protein R3HCC1L
    Names
    R3H and coiled-coil domain-containing protein 1-like
    growth inhibition and differentiation related protein 86
    growth inhibition and differentiation-related protein 88
    putative mitochondrial space protein 32.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256619.2NP_001243548.2  coiled-coil domain-containing protein R3HCC1L isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS73178.1
      Conserved Domains (1) summary
      cl17169
      Location:644708
      RRM_SF; RNA recognition motif (RRM) superfamily
    2. NM_001256620.2NP_001243549.2  coiled-coil domain-containing protein R3HCC1L isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS31267.1
      Related
      ENSP00000359616.3, ENST00000370584.7
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily
    3. NM_001256621.2NP_001243550.2  coiled-coil domain-containing protein R3HCC1L isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS58093.1
      Related
      ENSP00000479916.1, ENST00000613938.4
      Conserved Domains (1) summary
      cl17169
      Location:36100
      RRM_SF; RNA recognition motif (RRM) superfamily
    4. NM_001351010.2NP_001337939.2  coiled-coil domain-containing protein R3HCC1L isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS31267.1
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily
    5. NM_001351011.2NP_001337940.2  coiled-coil domain-containing protein R3HCC1L isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS31267.1
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily
    6. NM_001351012.2NP_001337941.2  coiled-coil domain-containing protein R3HCC1L isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (8) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS31267.1
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily
    7. NM_001351013.2NP_001337942.2  coiled-coil domain-containing protein R3HCC1L isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (9) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS31267.1
      Related
      ENSP00000314018.6, ENST00000314594.6
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily
    8. NM_001351014.2NP_001337943.2  coiled-coil domain-containing protein R3HCC1L isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (10) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS31267.1
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily
    9. NM_001351015.2NP_001337944.2  coiled-coil domain-containing protein R3HCC1L isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (11) lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS31267.1
      Related
      ENSP00000298999.3, ENST00000298999.8
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily
    10. NM_001351016.2NP_001337945.2  coiled-coil domain-containing protein R3HCC1L isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (12) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS31267.1
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily
    11. NM_001351017.2NP_001337946.2  coiled-coil domain-containing protein R3HCC1L isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (13) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS31267.1
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily
    12. NM_014472.5NP_055287.5  coiled-coil domain-containing protein R3HCC1L isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS31267.1
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily
    13. NM_138469.3NP_612478.3  coiled-coil domain-containing protein R3HCC1L isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and lacks an exon in the coding region, but maintains the reading frame, compared to variant 1. Variants 2, 3, 4 and 6-13 encode the same isoform (2), which is shorter than isoform 1.
      Source sequence(s)
      AL139241, AL355301
      Consensus CDS
      CCDS31267.1
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

      Range
      98134630..98244897
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011539642.1XP_011537944.1  coiled-coil domain-containing protein R3HCC1L isoform X2

      See identical proteins and their annotated locations for XP_011537944.1

      UniProtKB/TrEMBL
      A0A087X0M0
      Conserved Domains (1) summary
      cl17169
      Location:644708
      RRM_SF; RNA recognition motif (RRM) superfamily
    2. XM_011539639.1XP_011537941.1  coiled-coil domain-containing protein R3HCC1L isoform X1

      Conserved Domains (1) summary
      cl17169
      Location:651715
      RRM_SF; RNA recognition motif (RRM) superfamily
    3. XM_011539649.1XP_011537951.1  coiled-coil domain-containing protein R3HCC1L isoform X3

      Conserved Domains (1) summary
      cl17169
      Location:637701
      RRM_SF; RNA recognition motif (RRM) superfamily
    4. XM_011539643.1XP_011537945.1  coiled-coil domain-containing protein R3HCC1L isoform X2

      See identical proteins and their annotated locations for XP_011537945.1

      UniProtKB/TrEMBL
      A0A087X0M0
      Related
      ENSP00000483494.1, ENST00000612478.4
      Conserved Domains (1) summary
      cl17169
      Location:644708
      RRM_SF; RNA recognition motif (RRM) superfamily
    5. XM_024447941.1XP_024303709.1  coiled-coil domain-containing protein R3HCC1L isoform X2

      Conserved Domains (1) summary
      cl17169
      Location:644708
      RRM_SF; RNA recognition motif (RRM) superfamily
    6. XM_011539641.1XP_011537943.1  coiled-coil domain-containing protein R3HCC1L isoform X2

      See identical proteins and their annotated locations for XP_011537943.1

      UniProtKB/TrEMBL
      A0A087X0M0
      Conserved Domains (1) summary
      cl17169
      Location:644708
      RRM_SF; RNA recognition motif (RRM) superfamily
    7. XM_011539644.2XP_011537946.1  coiled-coil domain-containing protein R3HCC1L isoform X2

      See identical proteins and their annotated locations for XP_011537946.1

      UniProtKB/TrEMBL
      A0A087X0M0
      Conserved Domains (1) summary
      cl17169
      Location:644708
      RRM_SF; RNA recognition motif (RRM) superfamily
    8. XM_011539646.1XP_011537948.1  coiled-coil domain-containing protein R3HCC1L isoform X2

      See identical proteins and their annotated locations for XP_011537948.1

      UniProtKB/TrEMBL
      A0A087X0M0
      Conserved Domains (1) summary
      cl17169
      Location:644708
      RRM_SF; RNA recognition motif (RRM) superfamily
    9. XM_011539640.1XP_011537942.1  coiled-coil domain-containing protein R3HCC1L isoform X2

      See identical proteins and their annotated locations for XP_011537942.1

      UniProtKB/TrEMBL
      A0A087X0M0
      Conserved Domains (1) summary
      cl17169
      Location:644708
      RRM_SF; RNA recognition motif (RRM) superfamily
    10. XM_011539648.1XP_011537950.1  coiled-coil domain-containing protein R3HCC1L isoform X2

      See identical proteins and their annotated locations for XP_011537950.1

      UniProtKB/TrEMBL
      A0A087X0M0
      Conserved Domains (1) summary
      cl17169
      Location:644708
      RRM_SF; RNA recognition motif (RRM) superfamily
    11. XM_011539645.2XP_011537947.1  coiled-coil domain-containing protein R3HCC1L isoform X2

      See identical proteins and their annotated locations for XP_011537947.1

      UniProtKB/TrEMBL
      A0A087X0M0
      Conserved Domains (1) summary
      cl17169
      Location:644708
      RRM_SF; RNA recognition motif (RRM) superfamily
    12. XM_017016081.1XP_016871570.1  coiled-coil domain-containing protein R3HCC1L isoform X4

      UniProtKB/Swiss-Prot
      Q7Z5L2
      Conserved Domains (1) summary
      cl17169
      Location:630694
      RRM_SF; RNA recognition motif (RRM) superfamily
    13. XM_017016074.1XP_016871563.1  coiled-coil domain-containing protein R3HCC1L isoform X2

      UniProtKB/TrEMBL
      A0A087X0M0
      Conserved Domains (1) summary
      cl17169
      Location:644708
      RRM_SF; RNA recognition motif (RRM) superfamily
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