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    Slc30a6 solute carrier family 30 (zinc transporter), member 6 [ Mus musculus (house mouse) ]

    Gene ID: 210148, updated on 22-May-2018
    Official Symbol
    Slc30a6provided by MGI
    Official Full Name
    solute carrier family 30 (zinc transporter), member 6provided by MGI
    Primary source
    MGI:MGI:2386741
    See related
    Ensembl:ENSMUSG00000024069
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ZnT6; 9530029F08Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 12.8), large intestine adult (RPKM 9.7) and 28 other tissues See more
    Orthologs
    See Slc30a6 in Genome Data Viewer
    Location:
    17; 17 E2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (74395578..74424229)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (74794972..74823569)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene ribosomal protein L32 pseudogene Neighboring gene spastin Neighboring gene NLR family, CARD domain containing 4 Neighboring gene predicted gene 4708 Neighboring gene ribosomal protein S6 pseudogene

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Related articles in PubMed

    Markers

    Homology

    Clone Names

    • MGC11963

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    cation transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    Golgi to endosome transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cation transport IEA
    Inferred from Electronic Annotation
    more info
     
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrion HDA PubMed 
    Preferred Names
    zinc transporter 6
    Names
    solute carrier family 30 (zinc transporter), member 4
    solute carrier family 30 member 6
    zinc transporter-like 3

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252478.1NP_001239407.1  zinc transporter 6 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC169506, AK160903, CT033749
      Consensus CDS
      CCDS57109.1
      UniProtKB/TrEMBL
      J3QMX8
      Related
      ENSMUSP00000136503.1, ENSMUST00000179074.7
      Conserved Domains (2) summary
      COG1230
      Location:83336
      CzcD; Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
      pfam01545
      Location:43260
      Cation_efflux; Cation efflux family
    2. NM_144798.6NP_659047.2  zinc transporter 6 isoform 2

      See identical proteins and their annotated locations for NP_659047.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AC169506, AK082907, CT033749
      Consensus CDS
      CCDS37691.1
      UniProtKB/Swiss-Prot
      Q8BJM5
      Related
      ENSMUSP00000024870.6, ENSMUST00000024870.6
      Conserved Domains (2) summary
      COG1230
      Location:55331
      CzcD; Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
      pfam01545
      Location:43255
      Cation_efflux; Cation efflux family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      74395578..74424229
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017317374.1XP_017172863.1  zinc transporter 6 isoform X1

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