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    Lyz2 lysozyme 2 [ Mus musculus (house mouse) ]

    Gene ID: 17105, updated on 15-Oct-2019

    Summary

    Official Symbol
    Lyz2provided by MGI
    Official Full Name
    lysozyme 2provided by MGI
    Primary source
    MGI:MGI:96897
    See related
    Ensembl:ENSMUSG00000069516
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Lys; Lzm; Lzp; Lysm; Lyzs; Lyzf2; Lzm-s1; AI326280
    Expression
    Biased expression in lung adult (RPKM 2122.9), spleen adult (RPKM 368.6) and 7 other tissues See more

    Genomic context

    See Lyz2 in Genome Data Viewer
    Location:
    10 D2; 10 65.34 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    108 current GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (117277541..117282272, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (116714597..116719328, complement)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene YEATS domain containing 4 Neighboring gene RIKEN cDNA 9530003J23 gene Neighboring gene predicted gene, 31963 Neighboring gene lysozyme 1 Neighboring gene cleavage and polyadenylation specific factor 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity, acting on glycosyl bonds ISO
    Inferred from Sequence Orthology
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    lysozyme activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    lysozyme activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    cytolysis IEA
    Inferred from Electronic Annotation
    more info
     
    defense response to Gram-negative bacterium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    defense response to Gram-negative bacterium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    defense response to Gram-positive bacterium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    defense response to Gram-positive bacterium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi cis cisterna ISO
    Inferred from Sequence Orthology
    more info
     
    Golgi stack ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum lumen ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    microvillus ISO
    Inferred from Sequence Orthology
    more info
     
    rough endoplasmic reticulum lumen ISO
    Inferred from Sequence Orthology
    more info
     
    secretory granule ISO
    Inferred from Sequence Orthology
    more info
     
    trans-Golgi network transport vesicle ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    lysozyme C-2
    Names
    1,4-beta-N-acetylmuramidase C
    lysozyme C type M
    lysozyme f2
    NP_059068.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_017372.3NP_059068.1  lysozyme C-2 precursor

      See identical proteins and their annotated locations for NP_059068.1

      Status: PROVISIONAL

      Source sequence(s)
      AK153475
      Consensus CDS
      CCDS48694.1
      UniProtKB/Swiss-Prot
      P08905
      UniProtKB/TrEMBL
      A0A077S2U6
      Related
      ENSMUSP00000089801.7, ENSMUST00000092163.8
      Conserved Domains (1) summary
      smart00263
      Location:19147
      LYZ1; Alpha-lactalbumin / lysozyme C

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p6 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p6 C57BL/6J

      Range
      117277541..117282272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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